Cronobacter muytjensii: AFK63_00680
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Entry
AFK63_00680 CDS
T04067
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cmw
Cronobacter muytjensii
Brite
KEGG Orthology (KO) [BR:
cmw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmw03016
]
AFK63_00680
Enzymes [BR:
cmw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AFK63_00680
Transfer RNA biogenesis [BR:
cmw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AFK63_00680
Prokaryotic type
tRNA splicing ligases
AFK63_00680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ALB69198
LinkDB
All DBs
Position
124263..125486
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AA seq
407 aa
AA seq
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MKENYQTLAQVNGAPVKMWTHGVPVEPEAREQLLKTAKMPFIFKHLAVMPDVHLGKGSTI
GSVIPTKGAIIPAAVGVDIGCGMIAVRTSLVARDLPDNLSGLRSAIEQAVPHGRNVGHGK
RDKGSWSNTPQDVDNHWATLAPRFKRLTDKYPNLLKTNNHQHLGTLGTGNHFIEICLDEQ
ERVWVMLHSGSRGVGNAIGTHFIGLAQKDMQRHIANLPDRDLAYFEEGSKHYADYIEAVE
WAQDFARQNREVMMNRVLAALSAIITKPFMTQQEAVNCHHNYVQKETHFGEEILVTRKGA
VSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRAT
AHVECRKDSDVIDEIPMAYKDIEAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaactatcagacgctggcgcaggttaacggcgcgccggtaaaaatgtggacg
cacggcgtaccggtggagccggaagcgcgcgagcaactgctgaagacggcaaaaatgcca
tttatctttaaacacctggcggtaatgccggatgtgcacctgggtaaaggctccaccatc
ggcagcgtgatcccgaccaaaggcgcgattatcccggcggcggtaggtgtcgatatcggc
tgcggaatgatcgcggtgcgcacctcgcttgtcgcgcgcgatctgccggataacctgagc
gggctgcgtagcgctatcgagcaggccgttccgcacgggcgtaacgtcggtcacggtaag
cgcgataaagggtcgtggtcgaacacgccgcaggatgtggataatcactgggcgacgctc
gcgccgcgctttaagcgcctgaccgataaatatcccaacctgctgaaaaccaataatcat
cagcatctgggaacgctcggtaccggcaaccactttatcgagatctgccttgatgagcag
gagcgcgtctgggtgatgctgcacagcgggtcacgcggcgtgggtaacgccatcggcacc
cactttatcgggcttgcccagaaagatatgcaacgccatattgccaatctgccggaccgc
gacctcgcttattttgaagagggcagcaagcactacgccgattacatcgaagcggtagag
tgggcgcaggattttgcccgccagaaccgcgaagtgatgatgaaccgcgtgctggctgcg
ctgtccgccatcattacgaagccatttatgacgcagcaggaggccgtgaactgccaccat
aactatgtgcagaaggaaacgcactttggtgaagagatcctggtgacgcgtaaaggggcg
gtgtcggcgcagaaagggcagatggggataatcccaggctcaatgggcgcgaaaagtttt
atcgtgcgtgggctgggtaatgaagagagcttctgctcatgcagccacggcgccgggcgt
accatgagccgtaccgcggcgaaaaaacgcttcacagtggaagatcaaattcgcgccacg
gcgcatgttgagtgtcgtaaagacagcgacgtgatcgacgaaattccgatggcgtataaa
gacatcgaggccgtgatggcggcgcagtcgtcgctggtggaaattgtgcatacgttgcgt
caggtcgtgtgcgttaagggataa
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