Cronobacter muytjensii: AFK63_16325
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Entry
AFK63_16325 CDS
T04067
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cmw
Cronobacter muytjensii
Pathway
cmw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK63_16325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmw03019
]
AFK63_16325
03016 Transfer RNA biogenesis [BR:
cmw03016
]
AFK63_16325
Enzymes [BR:
cmw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AFK63_16325
Messenger RNA biogenesis [BR:
cmw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AFK63_16325
Transfer RNA biogenesis [BR:
cmw03016
]
Prokaryotic type
tRNA degradation factors
AFK63_16325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
aRib
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
Spt6_S1
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ALB72110
LinkDB
All DBs
Position
complement(3552108..3554243)
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT
INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA
GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE
ALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDQLDENELGDIL
HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG
TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA
ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV
LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVM
EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI
AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK
RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQEAATPAAPEAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgtccgcaaatttcagtatggtcaacatactgtcactcttgaaacc
ggtatgatggctcgtcaggccacggctgccgttatggtaagcatggatgacaccgccgta
ttcgtgaccgtggtaggcgctaaaaaagcgaaaccgggtcaggactttttcccgctgacc
attaactatcaggagcgtacctacgctgctggccgtatccctggcggtttcttccgtcgt
gaaggtcgtccgagcgaaggcgaaacgctgatcgcgcgtctgattgaccgcccgctgcgt
ccgctgttcccggaaggcttcgttaacgaagttcaggttattgcgaccgtcgtttccgtt
aacccgcaggttaacccggatatcgtggcgatgattggcgcttccgctgcgctgtctctg
tctggtatcccgttcaacggcccgattggcgccgcgcgtgtgggttacatcaacgatcag
tacgtactgaacccgactcaggatgaactgaaatccagcaaactggatctggtcgttgcc
ggtaccgaaagcgccgtgttgatggtggaatccgaagctgaactgctgagcgaagatcag
atgctgggcgccgtagtgttcggccacgagcagcagcaggttgttatccagaatatcaac
gacctcgtgaaagaagcgggcaaaccgcgctgggactggcagccagaagccgctaacgaa
gcgctgaatgcgcgcgttaaagcgctggcagagtctcgcctgagcgacgcttatcgcatc
actgacaaacaagaacgttacagccagatcgacgctatcaaagcggacgttatcgcggca
ctgcaggctgagcaggcagaaggcgatcagcttgacgaaaatgagctgggcgacatcctg
cacgctatcgagaaaaacgttgtacgttctcgcgtgctggcgggcgaaccgcgtatcgac
ggtcgtgaaaaagacatgattcgtggtctggacgtgcgcactggcgtactgccgcgtact
cacggctccgcgctgttcacccgtggtgaaacccaggcgctggttaccgcgaccctcggc
accgagcgcgacgcgcagaacatcgacgagctgatgggcgagcgtactgaccgcttcctg
ttccactacaacttccctccgtactctgtcggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaatcggtcacggtcgtctggcgaagcgtggcgtactggcagttatgccggca
gccgatcgcttcccgtacaccgtacgtgtcgtgtctgaaatcaccgaatccaatggttct
tcttccatggcttccgtgtgtggcgcttctctggcgctgatggacgcaggcgtgccgatt
aaagccgcagtcgccggcatcgcgatgggtctggtgaaagaaggcgaaaactttgtcgta
ctgtccgacattctgggtgacgaagaccacctgggcgacatggacttcaaagtggcaggc
tctcgtgaaggtatcactgcgctgcagatggatatcaaaatcgaaggcatcaccaaagag
atcatgcaggttgcactgaaccaggctaaaggtgcgcgtctgcacatccttggcgtaatg
gaacaggctatcaacgcgccgcgtggcgatatctcccagttcgcaccgcgtatccacacc
atcaagatcagcccggacaagatcaaagacgtgatcggtaaaggcggttctgtgattcgt
gcgctgaccgaagaaaccggcaccaccatcgaaatcgaagatgacggtaccgtgaaaatc
gcagcgaccgacggcgagaaagcgaaacatgctattcgtcgtatcgaagagatcaccgca
gaaatcgaagtgggccgtatctacaacggtaaagtgacccgcatcgttgacttcggcgcc
ttcgtcgctatcggcggcggtaaagaaggtctggtgcacatctctcagatcgctgacaaa
cgcgttgagaaagtgaccgactatctgcagatgggtcaggaagtaccggttaaggtactg
gaagttgaccgccagggtcgcgtccgcctgagcatcaaagaagcgaccgagcagactcag
gaagcagcaacccctgctgcgccggaagccgagtaa
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