Chelonia mydas (green sea turtle): 102929490
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Entry
102929490 CDS
T02989
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmy03016
]
102929490 (RTCB)
Enzymes [BR:
cmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102929490 (RTCB)
Transfer RNA biogenesis [BR:
cmy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102929490 (RTCB)
Prokaryotic type
tRNA splicing ligases
102929490 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
102929490
NCBI-ProteinID:
XP_037736298
LinkDB
All DBs
Position
1:complement(251677319..251693463)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLNKNSWRIKKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtatctggacaagctcaacaagaacagctgg
aggatcaagaagggcttcgtgcctaacatgaatgtggaaggagtgttttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggtggcggtgctggt
ggattcttgcctgccatgaaacagattgggaatgtggctgcactacctggcattattcat
agatctattgggcttcctgatgtacattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtgacccagaggcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgattgctgcgtacgaacctggatgaaagtgacgtccagcccgtgaag
gaacagctcgcccaggccatgtttgaccatattccagttggggtgggctccaagggtgtc
atccccatgaacgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcggaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctgggagcaggaaaccattatgctgagatccaggtggtggatgacatttataatgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggcctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccggagggacaggactacctaaagggaatggcagcggctgggaactatgcatgggtcaac
cgctcttccatgactttcctaaccagacaggcctttgctaaagtcttcaacacaacccct
gatgacctagatcttcatgtgatctatgatgtgtctcataacatcgccaaagtggagcag
catgtggtggatggaaaagagcggaccctgctggtgcacagaaagggatcgaccagggct
ttccctcctcatcatcctctcattgctgtcgattaccaactgactggacagccagtactg
attggcggaacaatgggaacctgcagctatgttcttactggtaccgaacaaggcatgacc
gagacctttggaaccacgtgccatggagctggtcgtgcattgtcccgggccaaatctcga
cgaaacttggacttccaggatgtgttggacaagctggctgacatggggatcgccatccgt
gttgcttcccccaagctagtcatggaagaagcaccagaatcctataagaatgtgacagat
gtggttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatc
gctgttattaaaggctag
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