Chelonia mydas (green sea turtle): 102929651
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Entry
102929651 CDS
T02989
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102929651 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102929651 (MSH2)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102929651 (MSH2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
102929651
NCBI-ProteinID:
XP_037751798
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Position
3:171797498..171892552
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AA seq
940 aa
AA seq
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MAAVAAPVSAGESLWPEGSGAEGGFVRAVLALPDKPDTTVRFFERGEHYTVHGGDALLAA
RELFRTRGVIRLLAGGPGNQKLESVVLSKMNFESFLRDLLLVRQYRVEIYKNKAGSKSTK
ENDWYLAYKGSPGNLAQFEEILFGNNDMSTAIGVVGVKLYTADGQRIVGVGYVDTTLRKL
GVCEFPDNDQFSNLEALLVQIGPKECVLPGGETSGDMGKLRHIIQRGGIMITDRKKAEFT
TKDIVQDLNRLLKSKKEEQVTSATLPEIEKQVAISSLSAVIKYLELLLDESNFGQFELTS
FDLSQYMILDNAAVRALNLFQSSVENANSTQSLVGLLNKCKTPQGQRLVNQWIKQPLTDK
NRIEERLNLVEAFVVDTELRQCLQEELLRRFPDLNRLAKKFQRQVATLQDCYRMYQAINQ
LPNVVQALEKHEGAHQMLLLAVFVMPLNDLNSDFSKFQEMIETTLDMNKVENHEFLVKAS
FDPNLTELREKMNKLEESMQSLLKTAARELGLEAGKNIKLDSNSQLGHYFRITCREEKVL
RNNAKYKILDTQKNGVKFTNSKLSSFNEDYVRSREEYEEAQEAIVKEIINIASGYVEPIQ
TMNDVIAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGSRHPCIEVQDDIAFIPN
DVNFEKGKQMFHIITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCDSAEVTIVDCILARVG
AGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASK
ICAFCMFATHFHELTALANQVPTVNNLHVTALTTDEMLTMLYRVKKGVCDQSFGIHVAEL
AAFPKHVIESAKEKALELEEFQTIGKPEESEGEPAAKRCYREKEEGEKIIQEFLCKVKAL
PLRDMSEEDIRTKLKQLKAEVLAKNNGFVNEIVSRTKVTP
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtggcggcgcctgtctctgcgggggagtcgctgtggccggagggctcgggc
gccgagggcgggttcgtgcgcgcggtgctggcgctgcccgacaagcccgacaccaccgtg
cgcttcttcgagcgcggcgagcactacacggtgcacggcggggacgcgctgctggccgcc
cgcgagctcttccgcacccgcggcgtcatccggctgctggcggggggcccaggaaatcag
aaactcgagagtgttgtgcttagtaaaatgaactttgaatcttttctgagagatttactt
ctggttcgtcagtacagagttgaaatttacaagaacaaagcaggaagtaaatctaccaaa
gagaatgactggtatttggcatacaagggttctccaggtaaccttgcccagtttgaagaa
attctctttggcaataatgacatgtcgactgccattggtgttgtgggtgttaagctgtat
actgctgatggacaaagaatagttggagttgggtatgttgacactacgctcaggaagctg
ggtgtctgtgagtttccagataacgatcagttctcaaaccttgaagctctgctggttcaa
attggacctaaggaatgtgtgctaccaggaggagagacttctggagatatgggaaaactg
cgacacatcattcaaagaggaggaatcatgattacagaccgaaaaaaggctgaattcaca
acaaaagatattgtgcaggatctcaaccgcttgctaaaatcaaaaaaggaagagcaagtg
actagtgcaacattaccagagatagaaaaacaggttgcgatttcatccttgtcggccgtt
atcaagtatttagagctcttgttggatgaatctaactttggacaatttgaattgactagc
tttgacctcagtcaatatatgatactggataatgcagctgttcgagcccttaaccttttc
cagagttctgttgaaaatgccaacagtacacaatcattggttgggttattaaataagtgc
aaaactcctcaaggacaaagactggttaatcagtggatcaaacagccacttacggacaag
aacagaatagaagaaaggttaaatttggttgaggcctttgtggtagacacagagctacgg
cagtgccttcaagaagagcttctacgtcgttttccagatctcaaccggctagccaagaaa
tttcaaagacaagtagcaaccctgcaggactgttaccgaatgtatcaagctattaaccaa
ctacctaatgttgtacaagcactggaaaaacatgaaggagcacaccagatgttgttgctg
gcagtatttgtaatgcctctcaacgatctcaactctgacttctccaagtttcaggaaatg
atagaaacaactttagacatgaacaaggtggaaaatcatgaattccttgtgaaggcttct
tttgatcctaatctgacagagttgagagagaagatgaacaaactagaggagagcatgcag
tctcttctaaagactgcagccagagaactaggcttggaagctggcaagaacatcaaactg
gactccaattcacagttaggacattacttccgaattacctgccgggaagaaaaagttctc
cggaacaacgcaaaatataagatcttagatacccagaagaatggtgtgaaattcacaaac
agtaaattgagctccttcaatgaagactacgtaagaagcagagaagagtatgaagaggct
caggaagccattgttaaagaaatcattaatattgcttcaggatatgtagagccaatacag
acaatgaatgatgtgatagctcagttagatgctgtcgtcagttttgctcatgtatcaaat
ggagcacctgtgccatacgtacgtccggtcattctggaaaagggacaaggaagaattgtg
ttgaaaggttccagacacccttgcattgaagttcaagatgacatagcattcatccccaat
gatgttaactttgagaagggcaagcagatgttccatattattactggtcctaacatggga
gggaaatcaacatacattcgccaggctggagtgatagttcttatggcccaaattgggtgc
tttgtaccatgtgactcagcagaagtgactattgtggattgtatcctggctcgggtagga
gcaggagacagtcagttgaaaggtgtctcaactttcatggcggaaatgttagaaactgct
tcaattcttcggacagcatctgaaaattccttaataatcattgacgagttgggaagagga
acttcaacatatgatggatttgggttggcatgggctatttcagaatatatcgccagcaaa
atttgtgccttctgtatgtttgccacacatttccatgaactgacagcacttgctaaccaa
gtgccaactgtgaataatttacatgttacagcactaaccactgatgagatgctgactatg
ctttatcgtgtcaagaaaggtgtctgtgatcagagttttggaatacatgtagcagagctt
gctgcttttccaaagcatgtcatagagagtgcaaaagagaaggctctggagctagaggag
ttccaaactattggaaaacctgaggaatctgaaggagaaccagcagctaagagatgctac
agagaaaaagaggaaggtgaaaaaataattcaggaattcctttgtaaagtgaaagcattg
cccttgagagacatgtcagaggaagacatcagaaccaaactgaaacaactgaaagctgaa
gtgttggcaaagaacaacggttttgtgaatgaaattgtttcccgaacaaaagttactcca
tga
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