Chelonia mydas (green sea turtle): 102929950
Help
Entry
102929950 CDS
T02989
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04517
IgSF CAM signaling
cmy04520
Adherens junction
cmy04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
102929950 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
102929950 (AFDN)
04530 Tight junction
102929950 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_3
RA_2
PDZ_2
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
102929950
NCBI-ProteinID:
XP_037751086
LinkDB
All DBs
Position
3:123143228..123359092
Genome browser
AA seq
1929 aa
AA seq
DB search
MSGGGGSREEERRKLADIINHWNANRLDLFEISPPTEDLEFHGVMRFYFQDKAAGNFATK
CIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDIDEKPLVVQLNW
NKDDREGRFVLKNENDTLPPKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKRREKEAL
RQASDRDDRPFHGDDLENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEF
RSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVIEALEKYGLEKENPKDYCI
ARVMLPPGAQHSDDKGAKEIILDDDECPLQIFREWSSDKGILVFQLKRRPSDYIPKKTKK
QIDGKPLKGKERVDGSGYGSCLPPEKLPYLVELSPGRRNHFAYYNYHTYEDGSDSRDKPK
LYRLQLSVTEVGTEKFDDNSIQLFGPGIQSHHCDLTNMDGVVTVTPRNIDAETYVEGQRI
SETTMLQSGMKVQFGSSHVFKFVDPSQDHIIPKRTLDAGLMIKGPRHKTGIVQETTFDLE
GDVHSGTALPASKSTNRLDGDRTSSASSTAERGMVKPMIRVEQQQDYRRHDGRPQDMIGP
ELILPASIEFKESSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTCRYVLSNQYRPDISPT
ERTHKVIAIVNKMVSMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSR
ITLDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPDENNLQRPKIDDVLHTLTGAM
SLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWA
EKQGLELAADCHLSRIVQATTLLTMDKYSHDDIPNINSTCFKLNSLQLQALLQNYHCAPD
EPFIPTELIENVVAVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNVPS
GLQEFLDPLCQRGFCRLTPHPRSPGTWTMYFEGADYESHLLRENAELAQPLRKEPEIITV
TLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS
QERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQRVSDRRGSGKPRPKSEGFE
LYNNSAQNGSPESPQLPWTEYNEPKKLSGDDRLMKNRADHRSSPNVANQPPSPGGKNAYA
AGTTTKITSVSTGNLCTEEQTLPPRPEAYPIPTQTYTREYFTFPASKSQDRMGPAQNQWP
SYEDKPQIQAESNDSISAAMQRAAHSQEELRDDKIFQPERNRLEMVIRKDVEYIDRKSDS
DPWMNSSVDSSTSSQEHLNHSSKSISPGSCLTKSGPGRWKTPVINQPTPVAVSQPIRTDL
PPPPPPPPVHYAADFDGLQMDLPLPLPPPPPPNQLGMQVSSQVAAAERKKREEHQRWYEK
EKARLEEERERKRREQERKLGQMRTQPLIPAQPMVPPVSVQQVKPEKPSTLQRSQDTVIR
ELQPQQQPRTIERRDLQYITISKEELSSSDSLSPDPWKRDAKEKLEKQQQMHIVDMLSKE
IQELQNKPDRTAEENDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTMLIMQRLEA
EKRARQTAVPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEERRRQEEERTKREAE
EKRRQEEEYYNRLEAERRRQHDEAGRRLLEPDEPGLYRPPLPREYELPPPPPSSNAPPPP
PQRNTSYLKTQVLSPDTVYTAKFVAYNDDDEEEDSTLAGQDKYSSTRKSYGDLPPATLPP
QQPFRQPRPVSDGIFLSTSFQPPSVNANSTASKPSHPPSPSNKPSFFHPSSSKGPNPYTG
STGAIVGAHEVYRDPREKRSKSQDTDLPGAPENLTFRERQRLFSQGQDVSTKVKASRKLM
ELENELNTK
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcggcagccgggaggaggagcggcgcaaactcgccgatatcatcaac
cactggaacgcgaaccggctggacctgttcgagatcagcccccccaccgaggatttggag
tttcatggagtcatgagattttattttcaagacaaagcagctggaaactttgcaacaaaa
tgtattcgtgtttctagcactgccacaacgcaagatgtaatagaaacccttgcagagaaa
ttccgaccagacatgcgaatgttgtcgtctcctaaatactcactttatgaagtgcatgtc
agtggagaagaaagaagattagatatagatgagaagcctcttgttgtacaattaaattgg
aacaaagatgaccgagaggggaggtttgttcttaagaatgaaaatgatacacttcctcca
aagaaggctcagagcaatgggcctgaaaaacaagaaaaagagggagtgatccagaacttc
aaacggactctatcaaagaaagaaaagaaagaaaagaagaggcgagagaaagaggcattg
cgacaagcatcagatagagatgatagaccttttcatggagatgatcttgagaattctcgt
cttgcagcagaggtgtacaaagatatgccggagaccagcttcactcgcacaatatccaat
cctgaggtagtcatgaaacgacggcgacaacagaaactagagaagagaatgcaggagttc
cgcagctctgatggccggccagactcaggtgggaccctgaggatttatgcagacagttta
aaaccaaatataccatacaagaccatcctgctgtccactacagatactgcagactttgca
gttattgaagcactggagaagtacggtctggaaaaggaaaatcccaaggattactgtatt
gctcgggttatgcttcctcctggtgctcaacactctgatgataaaggtgctaaagaaatt
atccttgatgatgatgagtgcccacttcaaatattcagggaatggtctagcgataaagga
atactagtctttcagttgaaaagacggccttctgactatatcccaaagaaaaccaagaaa
caaattgatggaaagccattaaaggggaaggaaagagttgacgggtcgggctatggctct
tgccttcctcctgagaaactaccctacctggtggaattaagcccagggagaaggaatcac
tttgcctactacaactatcacacttatgaagatggttctgactccagagataagccaaaa
ctctatcgtctgcaattaagtgtcactgaagttggaacagaaaaatttgatgacaattct
atccagttgtttggtccaggaattcagtctcatcactgtgacctcaccaacatggatgga
gttgttactgttacaccaagaaatattgatgctgaaacttatgtggaaggtcagcgtatt
tcagagaccaccatgctgcagagtggcatgaaagttcagtttggatcatctcatgtattt
aaatttgtggatcccagtcaggaccacattattcctaaaagaactctagatgcaggtctc
atgatcaaaggtccaaggcacaaaactgggattgttcaggaaacaacatttgatctggag
ggagatgttcacagtggaacagcattaccagcgagcaagagcaccaacaggctggatggt
gacagaacttcatcagcatccagcacagctgaacgaggaatggtgaagccaatgattaga
gtggaacagcagcaagattatcgcaggcatgacggcagacctcaggacatgattgggcca
gaactgatattacctgcaagcatcgaattcaaggaaagttctgaagatgccttcttatct
gccattattaattataccaacagctcgacagttcattttaagttatcacctacttatgtt
ttgtacatgacgtgtcggtatgtattgtcaaatcagtacagacctgacatcagtcctact
gagcgtactcacaaagtcattgcaatagtcaacaagatggtgagcatgatggaaggagtt
atacaggaggtagaccaggttgatcagaagcagaagaatattgctggggcacttgccttt
tggatggcaaatgcatctgaattgctcaacttcattaagcaagaccgcgaccttagccga
attactttagatgcgcaagatgttttggcacatttggttcaaatggctttcaaatattta
gttcactgtcttcagtcagagcttaacaattacatgccagcattccttgatgatccagac
gaaaataatcttcaaaggcctaaaatagatgatgtcttgcatacactaactggagctatg
tccctgttgcgacgatgtagagtgaatgctgcactgactatacagctcttctcccagctc
tttcactttatcaacatgtggctttttaatagattggttactgacccagattccggattg
tgttcgcattactggggagccatcatccgtcaacagttgggccatatcgaggcctgggca
gaaaaacagggcctagagctggctgctgattgccacctaagcaggatagtgcaggcaact
acactacttaccatggataaatactcacatgatgacattccaaatattaacagtacctgc
tttaagttgaattctctacagctacaggcattactacagaattatcactgtgctccagat
gaaccatttatcccaacagagttgatagagaatgtagtggctgttgcagaaaatacagca
gatgaactagctcgtagtgatggcagagaagtccagctagaagaggatcctgacctacag
ctgccttttcttttgccagaagatggctattcatgtgatgttgtcagaaatgttccaagt
ggtttacaagaatttttagatccactatgccagagaggcttttgcaggctgacacctcac
ccacgttcaccaggcacttggacaatgtattttgaaggtgcagactatgaaagtcacctg
ttacgcgagaatgctgaactagctcagcctttgaggaaagaacctgaaatcatcacagta
acattaaagaaacaaaatggaatgggcctaagcattgtggctgctaagggtgcaggtcaa
gataaacttggaatctatgtcaagtctgttgtaaaaggaggagctgcagatgtggatggt
cggctagctgcaggcgatcagttgctcagcgtggatggtcgaagtttagtgggtctgtcc
caagaaagggcagcagagctcatgacgagaacaggttctgtagtgaccctagaagtagca
aaacaaggagcaatttaccatggtctggcaacactgcttaaccagccatccccaatgatg
caaagagtttcagaccgccgtggctcaggtaaaccccgaccaaagagtgaaggttttgag
ctgtataataattctgctcaaaatggatcacctgagagccctcagctgccttggacagag
tataatgaaccaaagaagctgtcaggggatgacagactgatgaagaatcgagctgatcat
cgctccagtcccaatgtagcaaatcagccaccaagccctggagggaagaatgcttatgct
gctggaactaccaccaagataacttcagtttctactggaaatctttgtacagaggagcag
acactgccaccaagacctgaagcttatcctataccaacacaaacctataccagagaatat
ttcacattcccagcttcaaaatcccaggatcgaatgggtcctgctcagaatcagtggcca
agttatgaagacaaaccacagatccaggcagagagtaatgactcaattagtgctgcaatg
cagcgtgcagctcattcccaggaagaacttcgagatgataaaatttttcaaccagaaagg
aatcgtctggagatggttataagaaaggatgtagagtacattgatcgaaagtcagacagt
gatccatggatgaattcatctgtggattccagcacatccagccaagagcatctgaaccac
tcctccaaatctatttcccctggttcttgtttaaccaaaagtggacccggccgatggaaa
actccagtcatcaaccagccaacaccagtggcagtttcccagcccatcagaacagacctt
cctccccctccccctcctccaccagtgcactatgcagctgatttcgatggactgcaaatg
gatttgcctttgcctctgcctccacctccccctccaaaccagctaggaatgcaagtatct
tcacaggtagctgctgcagaacgtaaaaagagagaggagcatcagcggtggtatgaaaag
gaaaaagcgcgtctggaggaagagcgagagaggaagcgtcgtgagcaggaaagaaaattg
ggccagatgcgtactcagccactaattcctgctcagcctatggttcctcctgtttctgtg
cagcaggtgaaaccagaaaagccttcaacgttgcagaggtcccaggacactgtcattcga
gagctacagccccaacagcaaccccgaaccattgaacgaagagatctgcagtacatcacc
atcagcaaagaagaactgtcctccagtgatagcttgtctcctgatccctggaaacgggat
gctaaggagaagctagaaaagcaacagcagatgcacattgtggacatgctgagtaaagag
attcaggaacttcaaaacaagcccgatcgtacagcagaagagaacgaccgtctgcgcaaa
cttatgctcgagtggcagttccagaaacgactccaagagtcaaagcaaaaggatgaggat
gatgaggaggaggaagatgatgatgtggataccatgctaattatgcaacggctggaggct
gaaaaaagagccaggcagactgctgtgccagcaatctctgttctagatttgttacaggat
gaagagcgtagacggcagcaacagttagaagagatgcgtaagcgagaagccgaagatagg
gccaggcaagaagaagagcgccggcgccaggaggaggagcggaccaagagggaggctgaa
gaaaagaggcgacaggaggaggagtattacaaccgtttggaagctgaaaggcgcagacag
catgatgaggcaggacgaagattactggaacctgatgagcctggtctgtacagacctccg
cttccacgggaatatgagctcccacccccacccccttcatctaatgctcctcctccccca
cctcagcgaaacacctcttacctcaaaacacaggtcctctcccctgacacagtttatact
gccaagtttgttgcatacaatgatgatgatgaggaggaggattccactctagcaggtcag
gataagtactccagcacaagaaaatcttatggtgaccttcctcctgccacccttccgcca
cagcagcccttccgccagccgcgcccagtctcagatggcatctttctttccacctcattc
cagccaccctccgtcaatgccaacagtactgcttccaaaccaagtcatcccccttcccca
tcaaacaaaccaagtttcttccatcccagcagctcaaaaggaccaaatccttacactgga
tctacaggagcaattgttggagcccatgaagtttatcgggatccaagagagaagagatct
aaaagtcaagacacagatttacctggagcaccagagaacttgacattcagggagcgccag
cgacttttttcccagggccaggatgtatcgactaaagtaaaggcttctaggaaattaatg
gaactggaaaatgagttgaacacaaaataa
DBGET
integrated database retrieval system