Chelonia mydas (green sea turtle): 102930005
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Entry
102930005 CDS
T02989
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X4
KO
K13126
polyadenylate-binding protein
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03015
mRNA surveillance pathway
cmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102930005 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
102930005 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102930005 (PABPC1L)
03041 Spliceosome [BR:
cmy03041
]
102930005 (PABPC1L)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102930005 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
102930005 (PABPC1L)
Spliceosome [BR:
cmy03041
]
Complex C
Other components
Complex C specific factors
102930005 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_10
RRM_occluded
RBD_RDR6
RRM_5
RBD_DEAH11
RRM_3
DUF6262
HTH_58
RRM_RdRP1_2
DUF1464
UPF0524
Motif
Other DBs
NCBI-GeneID:
102930005
NCBI-ProteinID:
XP_037771431
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All DBs
Position
13:19916440..19944040
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AA seq
330 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHTDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAANRAIDTMNGMLLNDRKVFVGHFKSRRERE
AEFGARAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVRVMMDDTGRSKGFGFVNFEK
HEEAQKAVADMNGKQINGRMVYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKKRLPRP
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagtggccctggatatccattagcttctttgtatgtgggagatcttcacaca
gatgtgaccgaagccatgctgtatgagaagttctcacctgctggaccgatcatgtccatc
agagtgtgtcgggatgttgccacgcgtcgatcgctcggttatgcctacataaattttcag
cagcctgctgatgctgagagggccttggacaccatgaattttgaagtgatcaaaggtcgg
cccattcgaatcatgtggtcccagcgagatcctggcctcaggaaatcaggggttggaaat
gtctttatcaagaatctggatgactccattgacaacaaagccttgtacgatacattctca
gcctttgggaatatcctttcttgcaaggtggtttgtgatgagaacggatcccgcggttat
ggctttgttcactttgagacccatgaggctgcaaatcgggccattgacaccatgaatggg
atgctgctcaatgaccgcaaggtctttgtcggccattttaaatcccgcagagagcgggag
gcagaatttggggcacgggccatggaattcaccaatgtctatatcaagaactttggggat
gatatggatgatgacagactgcgggaaatattctccaagtttgggaagacgctgagcgtc
agagttatgatggacgataccggtcgctcgaaagggttcgggtttgtcaactttgagaag
cacgaagaagcccagaaggctgtggcagacatgaacgggaagcagatcaatggccggatg
gtgtacgttggccgagctcagaagaggatggagcgtcagagtgaactgaagcgtaaattt
gaacagatcaaacaggaaagagtgagcagataccagggagtgaatttatatgtgaagaac
ctggatgatggtattgatgatgagcggctgaggaaggagttctctccatatggtaccatt
actagtgcaaagaagaggctaccaaggccgtga
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