Chelonia mydas (green sea turtle): 102930017
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Entry
102930017 CDS
T02989
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04512
ECM-receptor interaction
cmy04514
Cell adhesion molecule (CAM) interaction
cmy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102930017 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
102930017 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102930017 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmy04131
]
102930017 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cmy04090
]
102930017 (SDC1)
00535 Proteoglycans [BR:
cmy00535
]
102930017 (SDC1)
Membrane trafficking [BR:
cmy04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
102930017 (SDC1)
CD molecules [BR:
cmy04090
]
Proteins
102930017 (SDC1)
Proteoglycans [BR:
cmy00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
102930017 (SDC1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
102930017
NCBI-ProteinID:
XP_027687934
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All DBs
Position
3:20780352..20815234
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AA seq
313 aa
AA seq
DB search
MVNVSAVWLLALFLQAACSQTTNVNLPPEDLDSSGDDDDTFSGSGSGPLTNHSVVAWNIP
LEHANSSSRSTMSTGATVHQPAVDGTENPSEKEMVSTSPTSDVVPDEAVFSLKDETHELG
SAVEKPTTNEAVITRSPTTQSLTVRVTTTQASTTVHVIEPSIHSSSSPGVSKETFDPSFT
TISEEDAHSPTTTILTRGIYPIDDRETPSPEESSGDQGDFIFSEERTIPSESELADSSRD
AEAAGTSQGLMDRKEVLGGVIAGGLVGLLFAVFLVGFMLYRMKKKDEGSYSLDEPKQSNG
GYQKPQKQEEFYA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggtaaacgtgtcagcagtgtggctgttagccctcttcttgcaggcagcgtgctcgcaa
actacaaatgtaaaccttcctcctgaagacctggactcatctggtgatgatgatgatact
ttctccggctctggttctggtcccttgaccaaccattctgtggttgcctggaatatcccc
ttagaacatgcaaattcttcatcaaggtcaacaatgtctactggagcaactgttcaccaa
cctgcagttgatggcacggaaaatccatctgaaaaagaaatggtatcaacatcccccact
agtgatgtggtgccagatgaggctgtcttttcacttaaggatgaaactcacgaactgggc
tcagctgtagagaaacctacaacaaatgaggcagtcataacaagaagtccaactactcag
agtcttactgtcagagtaaccactacacaagcgtcaaccactgtccatgtaattgaacct
agtatccatagctctagttcacctggtgtctctaaagaaacatttgatcccagcttcacc
actattagtgaggaagatgctcactctccaactacaacaattctaaccaggggtatatac
cctatagatgatagggaaactccatctcctgaagaaagctctggggatcagggagacttt
atctttagtgaagaacgaacaataccatcagaatctgaactggctgactcttcaagagat
gctgaagctgctggaacttcccaggggttaatggacaggaaagaagttctaggaggtgtc
attgctggaggactagtaggcctgctgtttgcagtattcctagtgggatttatgctgtac
agaatgaagaaaaaagatgaaggcagctattcattggatgaaccaaaacaatcaaatgga
ggataccaaaaaccacagaaacaagaagaattctatgcataa
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