KEGG   Chelonia mydas (green sea turtle): 102930017
Entry
102930017         CDS       T02989                                 
Symbol
SDC1
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy04512  ECM-receptor interaction
cmy04514  Cell adhesion molecule (CAM) interaction
cmy04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102930017 (SDC1)
   04514 Cell adhesion molecule (CAM) interaction
    102930017 (SDC1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102930017 (SDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cmy04131]
    102930017 (SDC1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:cmy04090]
    102930017 (SDC1)
   00535 Proteoglycans [BR:cmy00535]
    102930017 (SDC1)
Membrane trafficking [BR:cmy04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    102930017 (SDC1)
CD molecules [BR:cmy04090]
 Proteins
  102930017 (SDC1)
Proteoglycans [BR:cmy00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   102930017 (SDC1)
SSDB
Motif
Pfam: Syndecan
Other DBs
NCBI-GeneID: 102930017
NCBI-ProteinID: XP_027687934
LinkDB
Position
3:20780352..20815234
AA seq 313 aa
MVNVSAVWLLALFLQAACSQTTNVNLPPEDLDSSGDDDDTFSGSGSGPLTNHSVVAWNIP
LEHANSSSRSTMSTGATVHQPAVDGTENPSEKEMVSTSPTSDVVPDEAVFSLKDETHELG
SAVEKPTTNEAVITRSPTTQSLTVRVTTTQASTTVHVIEPSIHSSSSPGVSKETFDPSFT
TISEEDAHSPTTTILTRGIYPIDDRETPSPEESSGDQGDFIFSEERTIPSESELADSSRD
AEAAGTSQGLMDRKEVLGGVIAGGLVGLLFAVFLVGFMLYRMKKKDEGSYSLDEPKQSNG
GYQKPQKQEEFYA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggtaaacgtgtcagcagtgtggctgttagccctcttcttgcaggcagcgtgctcgcaa
actacaaatgtaaaccttcctcctgaagacctggactcatctggtgatgatgatgatact
ttctccggctctggttctggtcccttgaccaaccattctgtggttgcctggaatatcccc
ttagaacatgcaaattcttcatcaaggtcaacaatgtctactggagcaactgttcaccaa
cctgcagttgatggcacggaaaatccatctgaaaaagaaatggtatcaacatcccccact
agtgatgtggtgccagatgaggctgtcttttcacttaaggatgaaactcacgaactgggc
tcagctgtagagaaacctacaacaaatgaggcagtcataacaagaagtccaactactcag
agtcttactgtcagagtaaccactacacaagcgtcaaccactgtccatgtaattgaacct
agtatccatagctctagttcacctggtgtctctaaagaaacatttgatcccagcttcacc
actattagtgaggaagatgctcactctccaactacaacaattctaaccaggggtatatac
cctatagatgatagggaaactccatctcctgaagaaagctctggggatcagggagacttt
atctttagtgaagaacgaacaataccatcagaatctgaactggctgactcttcaagagat
gctgaagctgctggaacttcccaggggttaatggacaggaaagaagttctaggaggtgtc
attgctggaggactagtaggcctgctgtttgcagtattcctagtgggatttatgctgtac
agaatgaagaaaaaagatgaaggcagctattcattggatgaaccaaaacaatcaaatgga
ggataccaaaaaccacagaaacaagaagaattctatgcataa

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