Chelonia mydas (green sea turtle): 102930059
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Entry
102930059 CDS
T02989
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102930059 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmy03041
]
102930059 (DHX38)
Enzymes [BR:
cmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102930059 (DHX38)
Spliceosome [BR:
cmy03041
]
Complex C
Other components
Step II factors
102930059 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
PhoH
AAA_30
Microtub_bd
AAA_7
AAA_16
SRP54
Motif
Other DBs
NCBI-GeneID:
102930059
NCBI-ProteinID:
XP_037733400
LinkDB
All DBs
Position
12:complement(41930160..41957281)
Genome browser
AA seq
1237 aa
AA seq
DB search
MEDVPEDTSMHRLEGADLETQVGGLIIKKKSACSEQHVFKAPAPRTSLLGLDLLAAQKRR
EREEKEDTEDKKKSKVSSYKDWEESKDDLGSSEEEGSDRASRSSRQDRHYRSAHVETPSH
TGGVSEEFWERSRQRERERREHGVYASSKEEKEHKRGRNRERDHDRKRDREERDRSRHSS
SRSEKDGSSERGSSRRGEPESPRHRPKDAATPSRSSWEEEDSGYSSSRRSQWESPSPTPS
YRDSERDRSHRASSARDADRRDRDRSVKNKYPDETPLPTPSYKYNEWADDRRHLGATPRL
SRGKGRREDAEEGISFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKK
REQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLLVH
NLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKKAQHKHWEL
AGTKLGDIMGIKKEEEPDQTLTEDGKVDYRTEQKFADHMKEKSEASSEFAKKKSIVEQRQ
YLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAA
MSVAKRVSEEMSVSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDHYSAII
MDEAHERSLNTDVLFGLLREVVARRADLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFP
VDVLFSKTPQEDYVEAAVKQTLQVHLSGAPGDILIFMPGQEDIEVASEQIVEHLEELEKA
PALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKV
FNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTN
LANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGAMDNTGGLTSTGRLMVEFP
LDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLT
YLNVYLQWKNSSYSMLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGSDWDIVR
KCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYM
QCVTSVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQ
ERRNPLGSVRSLKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtccctgaggacacttcgatgcaccggctggaaggagctgatctggagaca
caggttggaggcttgatcatcaagaagaaaagtgcctgcagtgagcagcatgtcttcaaa
gctccagccccccgcacctcactgctgggattggacttgctggctgcacagaaacgcagg
gagcgagaggagaaggaagacacagaggacaagaagaagtccaaagtctcctcctacaaa
gattgggaggagtccaaagatgatttgggaagttctgaggaggaggggagcgacagggcc
agcaggagcagccggcaggacaggcattaccgctctgcccacgtggagacgccgtcccac
actgggggggtcagcgaggagttctgggagcgcagccggcagcgggagcgtgaacggcga
gagcatggcgtctatgcctcctccaaggaggagaaggagcacaagcgggggcgcaataga
gaacgggaccacgaccgcaaacgggaccgagaggagcgggacaggagccgtcatagcagc
agccggtcagagaaggatggctcatcagagaggggcagcagcaggaggggtgaaccagag
agccccagacaccgaccgaaggatgcagccacgccatctcgctcgagctgggaggaagag
gacagtggctatagcagctcacggcgctcgcagtgggagtcgccttcccctacgccttcc
tatagggactccgagcgcgaccgcagccatcgagcatcctccgctcgtgatgcagacagg
agggaccgggacaggtcagtgaagaacaagtacccagatgagacaccgctgcccacccct
tcctacaaatacaatgaatgggctgatgaccggcggcacctgggggccactccacggcta
tccaggggcaaagggaggcgtgaagatgcagaagagggtatttcctttgagacggaggag
gagcggcagcagtgggaggacgaccagcggcaagccgaccgggactggtacatgatggac
gagggttacgacgagttccacaaccccttggcctactcatctgaggagtatgtgaagaag
cgggagcagcacttgcacaagcagaagcagaagcgcatctctgcacagcggaggcagatc
aatgaggacaatgagcgctgggagaccaatcgcatgctgacgagcggggtggtccatcgg
ctagaggtggatgaggactttgaggaagataacgcagccaaagtgcacctgctggtacac
aacctggtgcccccatttttggatgggaggatcgtcttcactaagcagccagagccagtc
atcccagtcaaggatgccacttcggatttggcaattatcgcccgcaaaggcagccagctg
gtgcgcaaacacagggaacagaaggaacgcaagaaggctcagcacaagcactgggagctg
gctggcaccaaactgggagacattatgggcatcaagaaagaggaggagccggaccagact
ctgacagaagatggcaaggtggattacaggacagagcagaagtttgctgatcacatgaag
gagaagagcgaggccagcagcgagtttgctaagaagaagtcgattgtggagcagaggcaa
tatctgcccatctttgctgtgcagcaggagctgctcaccatcatcagggataacagcatt
gtcattgtggtgggggagactgggagtggcaagaccacccagctgacccagtacctacat
gaggacggctacaccgactacggcatgatcggctgcacccagccccgcagagtggctgcc
atgtcagtagccaagcgggtcagcgaggagatgagcgtgagcctgggagaggaggtgggc
tatgccatccgctttgaggactgcacgtccgagaacacggtcatcaagtacatgacggac
gggatcctgctgcgggagtccctgcgcgaggccgacctagaccactacagcgccatcatc
atggatgaggcacacgagcggtcactcaacacggacgtgctcttcggcctgctgcgggag
gtggtggcgcgccgtgcggacttgaagctcattgtcacctcggccaccatggacgcagag
aagtttgcctccttctttgggaacgttcccatcttccacattcctggccgcaccttccct
gtcgatgtcctcttcagcaagaccccacaggaggactacgtggaggctgcggtgaagcag
accctgcaggtgcatctgtctggggcccctggagacatcctcatcttcatgccaggccag
gaggacattgaggtggcctcggagcagatcgtggagcatctggaggaactggaaaaggcc
ccagctctggctgtgctgcccatctactctcagctgccctctgacctgcaggccaagatc
ttccagaaggctccggacggtgtcaggaaatgcattgtcgctaccaacattgcggagacc
tcgctgactgtggatggcatcatgtttgtcatcgactccggctactgcaaactgaaggtc
ttcaacccccgcatagggatggatgccctgcagatctaccccatcagccaagccaatgcc
aaccagaggtcaggtcgtgctggccggacgggcccaggtcagtgcttcaggctctacacc
cagagcgcctacaagaatgagctgctgaccaccacggtgcctgagatccagcgcaccaac
ctggccaacgtggtgctcctgctcaagtctctgggcgtgcaggacctgctgcagttccac
ttcatggacccgccccctgaggacaacatgctgaactccatgtaccagctgtggatcttg
ggagccatggacaacacaggtggcctgacctcaacggggcgcctgatggtggagttccca
ctggacccggcgctctccaagatgctcattgtctcctgtgacatgggctgcagctccgag
atcctgctcatcgtctccatgctctctgtgcccgccatcttttaccggcccaagggccgg
gaggaagagagcgaccaggtgcgggagaagtttgctgttccggagagcgatcacctgacc
tacctaaacgtttacttgcagtggaagaacagcagctactccatgctgtggtgtaaccag
cacttcatccacgccaaggccatgaggaaggtgcgggaggtgcgtgcccagctgaaggat
atcatggtgcagcagcgcatgagcctggcatcctgcggctcagactgggacatcgtcagg
aagtgcatctgtgccgcgtacttccaccaggctgccaagctgaagggcatcggggagtat
gtgaacatccgcaccggcatgccctgccacctgcaccccaccagctctctctttggtatg
ggctacactccagactacatcgtgtatcacgagctggtcatgaccaccaaggagtacatg
cagtgtgtcacgtccgtggatggagagtggctagcggagctgggccccatgttctacagc
atcaagcatgcggggaagtcacgtcaggagaaccgacgtcgggccaaggaggaggtgtct
gccatggaggaggagatggctctggctgaagagcagctgcgagcacgccgggaagagcag
gagcgccgcaacccactgggcagcgtgaggtctttgaagatctatactccggggcgaaag
gagcagggggagcccatgacgccacgccgcactcctgcccgcttcggcctgtga
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integrated database retrieval system
