Chelonia mydas (green sea turtle): 102930262
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Entry
102930262 CDS
T02989
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmy03009
]
102930262 (IGHMBP2)
03012 Translation factors [BR:
cmy03012
]
102930262 (IGHMBP2)
Enzymes [BR:
cmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102930262 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
102930262 (IGHMBP2)
Ribosome biogenesis [BR:
cmy03009
]
Eukaryotic type
Other ribosome biogenesis factors
102930262 (IGHMBP2)
Translation factors [BR:
cmy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102930262 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
NAT10_TcmA_helicase
ResIII
nSTAND3
AAA_16
DEAD
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_25
DUF7205
IstB_IS21
Flavi_DEAD
AAA_33
nSTAND_NTPase5
AAA
AAA_18
PhoH
VWA_2
RL
SRP54
AAA_31
ABC_tran
CbiA
Zot
UvrD_C_2
DnaB_C
NPHP3_N
Gon7
ATPase
Motif
Other DBs
NCBI-GeneID:
102930262
NCBI-ProteinID:
XP_037755440
LinkDB
All DBs
Position
6:complement(21619308..21697206)
Genome browser
AA seq
988 aa
AA seq
DB search
MAAVPDFVSRQLELLQEEREAEIQETRAWRESIFLKELQRRGVCLLKLQVASQRTGLYGR
LLVMFQPRKYDPEAELPCNSFGPGDIVGLYESAGQGDPLSTGIVTRITPKSVTVAFEESR
DGLLSLGQENSYRLLKLANDVTYKRLKKALNTLTQYHSGPACNLIDVLFFSSDPSAPGET
KALKFYNESLDVSQREAVSFSLAQKELAIIHGPPGTGKTTTVVELILQAVQQGLKVLCCA
PSNIAVDNLVERLAGYKEKILRLGHPARLLETIQHHSLDAVLARGDNAQIVADIRKDIDQ
AFTKTKKTQDKGERSHFRNEIKALRKELKEREETAVTEILTRANVVLATNTGASSDGPLK
LLPENHFDLVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIISDKAAAKGLSLTL
MERLIQKFGESIVKMLTVQYRMHQAIMQWASTEMYCGRLSAHPSVAHHLLKDLPGVASTE
ETRIPLLLIDTAGCGLFELEVEDEQSKGNQGEVHLVGLHVQALVEAGVKARDIAVIAPYN
LQVDMLREHLCHRYPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVT
RARRHVAVICDSRTVSSQAFLKRLVDYLSEHGEVRTAFEYLDDIVPENYSHENSQGHGEQ
GAGSKTSTTSALKPPSEGRKSKSNPAKPSTRKPAAGPLQSVKEARVERPEMKDNSGKFRA
MMVEFLESSEMQLDFPSSLNSHDRMLVHQMAEEYGLQHVSTGEGRERYISISKRTTTISS
PPVNAGGSEQTLPAESQSPAKEALAPVKKGGSSINSGKVDLKTLHLERMQREKAKQEERV
RKNQELSTNLQEIAGRKHKNEAKGKTVVKTGADSPAEEDIDALISAAVKADSVCGFPRCQ
AGVTTLGQLCLHCHRHYCLSHRIPEVHGCGEKAKAQARQRISREGILYAGSGSKDKSLDP
AKRAHLQRRLDKKLNELTSQRKSKKKDK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgccggacttcgtgtcccggcagctggagctgctgcaggaggagagagag
gccgagatccaggagaccagggcatggcgggaaagcatcttcctgaaagaactccagcgc
agaggggtctgcttgctcaaactgcaggtagcaagtcaaagaactgggctgtacggacgg
ctacttgtaatgtttcagcctagaaaatatgatccagaggcggagctgccctgtaacagc
tttgggcctggtgacattgtgggtctttatgaatctgctggtcagggcgatccactttcc
acaggaattgtgacccgcataacccccaaatcagttaccgttgcctttgaggagtctcga
gatggcctgttgagcttgggccaagagaattcctaccgcctgctgaagctagccaatgat
gtcacctacaagaggctgaaaaaagctttaaacacactaacacagtatcactcgggtcca
gcatgcaatcttatcgatgtcctcttcttttcctctgatccaagtgctcccggtgaaaca
aaggctttaaaattctataatgaatcgctggatgtctcccagagggaggctgtctccttc
tcgctggcacagaaagaacttgccatcatccatggaccacccggaactggcaaaaccact
accgtggtcgagctaatacttcaagctgtgcagcaaggcctgaaagtcctgtgttgcgct
ccctcaaatattgcagtggataatctggtggaaagactggctggctataaggagaagata
ctgcgtcttggtcaccctgctcgtctgctggagaccatccagcatcattccttggatgcg
gtcttggcacgcggcgataatgcccagatagtggcagatatcaggaaggatattgaccag
gcattcacaaaaaccaaaaagacccaggacaagggagagagaagccatttccgaaatgag
attaaggcactgagaaaggagctgaaggagcgagaagaaactgctgtgactgaaatcctt
acccgggctaatgttgttcttgcaacaaatacaggtgcttcctctgatggtccactgaag
ttacttcctgaaaaccactttgatctggtggtgatagatgaatgtgctcaggcactagaa
gcaagctgctggatacctctgctgaaggccagaaagtgtatcctggctggggatcacaaa
cagctgcctcccacaatcatatctgacaaggctgcagcaaagggtctttctctcacctta
atggagcgtctgattcagaaatttggcgagagcatagtgaagatgctgactgtgcaatac
cgaatgcatcaggccataatgcagtgggcctccacagaaatgtactgtggccgactctca
gctcacccttccgtggcgcatcatttactgaaggacctgccgggagttgcttctacagaa
gaaactaggattccattgctgcttatagatacagctggctgtggcttatttgagcttgaa
gtggaagatgaacagtctaaagggaatcaaggggaagtgcatcttgtcggcttgcacgtc
caggctttggtggaagctggtgttaaagcaagagacattgctgtcattgctccttacaac
ctccaggtggacatgctaagagagcatctttgtcaccgatatccagagctggaaattaaa
tcagtagatggcttccagggacgggagaaggaggctgtcgtgctctcctttgtgagatcc
aatcggaagggcgaggtgggttttcttgctgaagaccggaggataaacgtggccgtgact
cgggcacgccgccatgtggcagtcatctgtgactcgcggaccgtcagcagccaggccttt
ctgaaacggctggtggattatctgagtgagcatggggaggtgcggacggcctttgagtac
ctcgacgacatcgtgccagaaaattactctcacgagaactctcagggtcatggtgagcaa
ggggcagggtctaaaaccagcacaacctctgctctgaaacctccatctgaaggccggaaa
tccaaatcaaatccagcgaaaccatccacacgcaagccagcagcaggtcccttgcagagt
gtgaaggaggccagggtggaaagaccagagatgaaagacaattcaggcaagttcagagcc
atgatggtggagtttctggagagcagcgagatgcagttggatttcccttcatccttaaac
tcgcacgacaggatgctggtgcaccaaatggccgaagaatatgggttgcagcatgtaagc
accggggaggggagagagaggtacatcagtatcagcaagagaaccaccaccatcagctcc
cctccagtgaatgcgggtggcagtgagcaaaccctgcctgccgaatctcaaagccctgca
aaagaggcgctagctcctgtcaagaagggaggaagcagcataaactcagggaaagtggat
ctgaaaacgctgcacctggagagaatgcaacgggaaaaagccaaacaggaagagagggtc
agaaagaatcaggagctgagcaccaatttgcaggaaatagctggaaggaaacacaaaaat
gaagccaaaggaaagactgtggttaaaaccggagcggacagcccagctgaggaagatatc
gatgccctgatttctgctgcggtgaaagctgacagtgtctgtggtttccccaggtgtcag
gccggcgttaccaccttgggacagctctgtctgcattgccaccggcactactgcctcagc
catcgcatcccagaggttcatgggtgtggggagaaagccaaagcacaagctcggcagaga
attagcagagaaggaattctctatgctgggagtggatcaaaagacaagtcactggaccca
gcaaaaagagctcatctccagaggcgcctggataaaaaacttaatgaattgaccagccag
agaaagagcaaaaagaaagacaaataa
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