Chelonia mydas (green sea turtle): 102930706
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Entry
102930706 CDS
T02989
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03440
Homologous recombination
cmy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102930706 (PALB2)
03460 Fanconi anemia pathway
102930706 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102930706 (PALB2)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
102930706 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
102930706 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
102930706
NCBI-ProteinID:
XP_027676842
LinkDB
All DBs
Position
10:2095304..2111000
Genome browser
AA seq
1317 aa
AA seq
DB search
MEGPAVGKALGWQEKEKLKEKLAFLKREYSKTFNRLQRAQRAERVKNYVKKTVAEQNQLL
RQEETENNTTELMDKQSPNDDDKSGIYMLQTNTCSDSGTEKKMSVTFKLEPEFFNNEVNL
QESSLAESTNSDQENILSGLMRSVTEENQSQLSRSRMTLVSEGRESACEVPPISVGETLE
NQMGSTEEPGSPVFKGRNTISNTKNKIQKAPKLVIVREEKGLTPQDPQVGDFQEMPEENV
FLSVPKPLSCMSMGGSNIQQPVSPCAEDICDSYEPLPQCLVGDMPVSLQNIENTGKELAC
IENQMDQEELCRAFDLTADNQPSLAGRSNPSTSESRPHKERNHNETKSSSPLNTDSLLDN
VEEPLRNQEAQTEAGSPVLEKTPPAAESALSSCTMIEGLLFPVEYYVRTTRRMSNCQRKV
DLEAVILSQLGRSRKGLRSKHKQINSNSDQLYQETARSDLQAGGTPFPFLGGESDPVSSN
SSQKSLPPSDESCTSSGSLSQKTVISMKQAKGKSWRRGRGRWGSTCRPALNGSQAHPQTS
DLTVLKENSHLLSNGSQPGKENCEGDPERSPIGKTRVLVPAAGEATETEMTDITWPTEAD
LPDVSQTFSKCHQPPLEHIQNPLQGNNFLNPWDEAFSSPTQDLEANVNVSQAGKQPVGHI
RNQCVQKACRAEQLPTVKESLLQHDLPSSSVKRKVRQGSKGKRGRSQQMDLEGPTPLSHL
GLDPMAFDPPFHFQNEMLSVKWLPSKLDIKDFHLPDEEFGLLKFEKLQSCTVKQLEPFVP
SGSEHWLQSAGDTVALGDMRLKQVNTEGKSLENSFISPSKTMSPKLPHLEGQLHKKGLSP
SELLLTPASSVSAGAINQLESQIPTSAFPVLGATPAVLSLVHNEALPDTLSVLPLQVKTN
LFKEPASHVMDGRECNNSTGTLHSDSCRTGSDCRSDEAVPLKEYQQPGSGSKECCGAENK
LTAEELAVVLSDSLRARSLQLASKLKNPSSSCAVDVSTVWWESAGFTELCIVTACETFIS
LWKPLASSQWRKVYTWHLTEIPVIQIVPLPDVSNLVCVALGDLEIGEIRLLLCSSEDGSL
KQSLVKTGNIKAVLGLTNRRLVSSSGTLQDQQIEIISVSEAGRSNERQTLMPPEETILAF
AEVEGIRDALVGTTAVNSLVVWNLKTGQILKKMHVGYSYPASICHRAYSDSGLLFVVLSH
PHAKENESCGNPAFRMRVFNPKTARSTGVMFFSLPPGHSGRYLEGEVKGVSAAAVLTSGT
IAVWDLFLGQCTALLPPNADGNWSLVRWSVTDSCLLAGQKDGSVYVYHYSQAKAVGK
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atggagggccccgccgtgggaaaggcgctgggctggcaggagaaggagaagctgaaagaa
aagttagccttcctgaaaagagaatacagcaaaacattcaacaggttacagcgtgcgcaa
agagctgagagggttaaaaattatgttaagaaaacggttgcagaacaaaatcaattgctt
aggcaagaggaaactgagaataataccacagaactgatggataaacagtctcccaatgat
gacgataaatctggaatatatatgttacagaccaatacctgttctgactcaggcactgag
aaaaaaatgtctgtcacatttaaacttgagcctgaattcttcaacaatgaagttaacttg
caggaaagttcattggcagaaagcacaaatagtgaccaagaaaatatcctctctggcctc
atgagatctgttactgaggagaaccaaagccaactgtcaaggagtagaatgactttggtc
tcagaggggagagaatcagcttgtgaagtgccaccaatcagtgttggtgaaacgttggaa
aatcaaatgggaagtacagaggagcctgggtcaccagtattcaagggaaggaacaccatc
tcaaacaccaagaataaaatccaaaaggcccccaagctggtcattgtgagggaagaaaaa
ggtttaactcctcaagatccacaggtaggagattttcaggaaatgcctgaagaaaatgta
tttctgagtgtccccaaaccactttcatgcatgtcgatgggtggcagtaacattcagcag
cctgtgtctccatgtgctgaggacatctgtgatagctatgagccattgccccagtgttta
gtgggtgatatgcctgtttcacttcaaaacatcgagaatacaggaaaagaacttgcctgt
atagaaaaccagatggatcaggaagagttgtgtagggcctttgatttaactgcagataat
caaccatccctggcaggcagaagcaaccctagcactagtgaaagcagaccccataaagaa
agaaaccacaatgagaccaagagctcaagtcctctgaacactgactctcttctggataat
gttgaagaacctttgaggaatcaagaggctcagactgaagcagggtctcctgtcctagag
aagactcctcctgcagcagaaagcgcactgagctcttgcacaatgattgagggactcctc
tttcctgtagaatattatgttaggacaactcggcgtatgtctaattgccagaggaaagta
gacctggaggctgtcattctcagccagttgggcaggagcaggaaagggctgcgaagtaaa
cataaacagataaattcaaattcagatcagctctaccaagaaaccgccagaagtgatttg
caggcagggggcactccgttcccttttctaggtggagagagtgacccagtgagttcaaat
agttctcagaaatctctccctccatcagatgagagctgcacttccagtggctctctttct
cagaagactgttattagtatgaaacaagctaagggaaaatcctggaggagaggaaggggc
agatggggttctacctgcagacctgcactgaatgggtcacaagcacatcctcagacttca
gatcttacagtgctaaaggaaaacagtcatctcttgtcaaatggttctcaacctggaaag
gaaaactgtgagggtgaccctgagaggtcacctataggcaaaacaagggtgcttgtccct
gcagctggtgaggctacagaaacagaaatgacagacattacgtggccaactgaggctgat
cttcctgatgtaagccaaacattcagcaaatgccatcagcctccattagaacatattcaa
aatccactccaaggaaataatttcttaaatccatgggatgaagctttctccagccccacg
caagatctggaagctaatgtaaatgtgagtcaggctggtaaacagccagtggggcacatt
aggaatcagtgtgttcagaaagcctgccgggctgagcagctgccaacagttaaagaatct
ctacttcagcatgatctcccaagttcctccgtgaagcgtaaagtgaggcaaggatctaaa
ggtaaaagagggcgcagtcaacagatggacttggaaggtccaactcctctaagccatctt
ggtctggatcctatggccttcgatcctccctttcacttccagaatgagatgctcagtgtc
aagtggctgccctctaagctggacatcaaagactttcatttacccgatgaggagtttggt
ctccttaaatttgagaaactacaatcctgcacagtgaaacagctggagccctttgttcct
tcagggtctgaacactggctccagagtgctggagacactgtggctttaggggacatgaga
cttaaacaagtgaatacagaagggaagagtctagaaaatagctttatttctccttcaaag
actatgtcacctaaactgcctcacttagaagggcagttgcacaagaaggggctttctcca
agcgaattgctgctaactccggcaagttctgtctcagctggtgcaatcaaccagctggaa
tcacagattcctacatctgctttccctgtcctgggtgcaaccccagctgtcctgtcactg
gtacacaatgaggccttacctgacacactttctgtacttcctttgcaagtgaaaacaaat
ctcttcaaagaaccagccagtcatgtcatggatgggagagagtgtaataactccacaggt
acattgcactcagatagctgcagaacaggatctgactgtaggtctgatgaagctgtcccc
ctcaaagagtatcagcaaccagggagcggttccaaggagtgctgcggtgcagagaacaaa
ctgacagcagaagagttggccgtggtgctgagtgacagcctgagagccaggagcttgcaa
ctggcctcaaagctaaagaacccctcaagttcttgtgctgtggacgtcagcaccgtctgg
tgggaatcagctggcttcacagagctgtgtatcgtaactgcttgtgagactttcatttcc
ctgtggaaacctctggcttccagccagtggagaaaggtgtatacctggcaccttacagag
attccagtaatacaaattgttcccttgccagatgtctctaatcttgtatgcgttgccttg
ggagatctggagattggagaaataaggctcttgctttgttcttctgaagacggctcctta
aagcaatcactagtgaaaactgggaacataaaagctgttcttggtctgacaaacaggagg
ctggtcagtagtagtgggacacttcaagaccagcaaatcgagataatctccgtttcagag
gcaggaagaagcaatgagaggcagactttgatgcccccagaagaaaccattctggctttt
gctgaggtagaagggattagagatgctttggttggcaccactgcagtgaacagccttgtt
gtttggaacttgaaaactggccagattctgaaaaagatgcacgttggttattcctaccct
gcctcaatctgccatcgcgcctattctgactctggcctcctgtttgttgttttaagtcac
ccacatgccaaagagaatgagtcctgtggaaaccctgcattccggatgagagtgttcaat
cccaaaacagccagaagcactggggtaatgttcttctccctcccccctggacacagtgga
aggtacctggaaggcgaagtgaagggtgtctctgcagcagctgtgctaacatctggaaca
atcgcagtgtgggacttatttttaggccagtgtactgctctgcttccaccaaatgctgat
gggaattggtctttggtcagatggtcagtcacagattcctgtctcctggctggacagaaa
gacggaagcgtgtatgtgtaccattattcacaagccaaagcagtaggaaagtaa
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