Chelonia mydas (green sea turtle): 102930731
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Entry
102930731 CDS
T02989
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102930731 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102930731 (XAB2)
03041 Spliceosome [BR:
cmy03041
]
102930731 (XAB2)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102930731 (XAB2)
Spliceosome [BR:
cmy03041
]
Complex B
Other components
Prp19-related factors
102930731 (XAB2)
Complex C
102930731 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
RPN7
TPR_1
LTN1_E3_ligase_6th
NRDE-2
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
102930731
NCBI-ProteinID:
XP_037740212
LinkDB
All DBs
Position
20:complement(7550475..7566854)
Genome browser
AA seq
863 aa
AA seq
DB search
MPELEETPVAAGGGKPDLFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIY
ERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDYC
QFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSP
ENAEEYIEYLRSIDRLDEAALRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKS
LNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFD
SYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNV
HEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDARTI
FEKATKVNFKQVDDLACVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDASEPVQ
NRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYFEES
FKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYL
LYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEKAIE
SPPQVLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIR
HGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLE
QRAEQLAAEAERDKPRSKEKILFVRSDASRSELAALSRQVNPDEIDIDEDEEEGDESEEN
EPDEVQLEQQSVPSAVFGGLKAD
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaggagacgccggtggccgctggcggggggaagccggacctcttcttc
gaggaggaggacctgcagtacgaggaagaaatcctgcgcaaccccttctctgtcaagtgc
tggatccgctacattgagttcaagcagaacgcccctcggcatgtgctgaacctgatctac
gagagagccctcaaggagctgccaggcagttacaagctgtggtacaactaccttaagcag
cgccggaagcaggtgaagaacaggtgtgtgactgaccctggctatgaggaggtgaacaac
tgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagattactgc
cagttcctcatggaccagtgccggatcacccgcacacgcaggacctttgaccgggcactc
cgggcactgcccatcacgcagcaccatcgaatctggcccctctacctgaagtttgtgcgc
ttgtaccccctgcccgagacagctgtgcgagtctaccgcaggtacctgaagctgagccct
gagaacgctgaggagtacatcgaatatctgcgctccatcgaccggctggacgaggctgcc
ctccgccttgccactgtggtcaatgacgagaggttcgtctccaaggaggggaaatccaac
taccagctgtggcacgagctttgtgacctcatctcccagaatcctgacaaggtgaagtcc
ctcaatgttggggccatcattcgcggaggcctcacccgcttcaccgaccagctgggcaag
ctctggtgctccctagccgactactacatccgcagcgggcactttgagaaggcccgggac
gtgtacgaggaggccatccagacggtgatgacagtgcgggatttcacccaggtgtttgac
agctacgcccagttcgaggagagcatgatcgcagccaagatggagaccacctctgagctg
gggcaggaggaggaggatgatgtggacctggagctgcgcctggctcgctttgagcagctg
atcacacggcgccccctgctgctcaacagcgtgttgctgcgccagaacccccataacgtc
cacgagtggcacaagcgtgtgaagctctatgaggggaagccccgagagatcatcaacacc
tacacggaggccgtgcagaccgtggaccccttcaaggccaccggcaagacacacacactc
tgggtctcctttgccaagttctatgaggacaatgggcagatcgaggatgccaggaccatc
tttgagaaagccaccaaggtgaacttcaagcaggtggacgacctagcctgcgtttggtgc
gagtatggggagatggagctgcgccatgagaattatgaccaggccctgcgcatcctccgg
aaagccacggccatcccagccaagaaagcagaatacttcgacgcctcagagcccgtccag
aaccgcgtgtacaagtccctcaaggtctggtccatgctggccgacctggaagagagcctg
ggcaccttcaagtccaccaaggctgtgtatgaccgcatcctggacctgcgcatcgccaca
ccccagatcatcatcaactacgccctcttcctggaggagcacacctactttgaggagagc
ttcaaggcctacgagaggggcatctccctgttccgctggcccaacgtgtacgacatttgg
aacacctacctgaccaagttcatcgaccgctatggtggcaagaagctggagcgtgcccgt
gacctcttcgagcaggcactggacggctgcccccagaaatacgccaagaccatctacctg
ttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggcagtgtacgag
cgggccacgcgggccgtgcagccctcggagcagtacgagatgtacaacatctacatcaag
cgggcggccgagatctatggggtcacccacacccgtagcatctatgagaaggccattgag
tctcccccacaggtgctgtcagacgagcacgcccgcgagatgtgccagcgctttgccgac
atggagtgcaagctgggcgagatcgaccgggcccgggccatctactcctactgctcacag
atctgtgacccccggaccacaggctccttctggcagacatggaaggactttgagatccgg
cacgggaacgaagacacgatccgggagatgctgcgcatcaaacgcagcgtccaagccacc
tacaacacccaggtcaacttcatggcctcgcagatgctcaaagtctccagcaatgccaca
ggcaccgtgtcagacctggcgccagggcagagtggcatggacgacatgaagctgctggag
cagcgggcagagcagctggcggctgaggcagagcgggacaagccccggtccaaggagaag
atcctctttgtcaggagcgatgcgtcacgcagtgagctggccgcactctccaggcaggtg
aaccccgacgagattgacattgatgaggacgaggaggagggggatgagagcgaggagaat
gagcctgatgaggtgcagctggagcagcagagcgtcccctcagctgtgttcggggggctg
aaggccgactga
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