Chelonia mydas (green sea turtle): 102930925
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Entry
102930925 CDS
T02989
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein isoform X4
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03440
Homologous recombination
cmy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102930925 (BRIP1)
03460 Fanconi anemia pathway
102930925 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102930925 (BRIP1)
Enzymes [BR:
cmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102930925 (BRIP1)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102930925 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
102930925 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
HBB
Motif
Other DBs
NCBI-GeneID:
102930925
NCBI-ProteinID:
XP_027675953
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All DBs
Position
17:5676236..5806835
Genome browser
AA seq
1282 aa
AA seq
DB search
MSLVVSEYTIGGVKIVFPCKAYPSQLAMMNAIVKGLNSRQHCLLESPTGSGKSLALLCSV
LSWQQSLHEKSLDEFSCEKECKKPETSLPCHCRCHSQAVANDTTADVNRGASCSFTTCKA
ATSVKSETPSTDKVMNTPATEHNTKVTLSSKLSAKKWASLHADENDDFQVDRKRIRLLET
EQQVRKRHCFAKGVQFVDALEVYQQRRNGELTVHSEKIAAFSPKTSPGLCTQCSCSSVKE
NGKNVSYAKRKENGGKPHIPKIFFGTRTHKQIAQITRELQRTVYSSVRMTILSSRDHTCV
HPVVSRSSNRNEKCADLLEGKNSGSCVYYHGVHKISEHHALQFARKKCQAWDIEDLVSLG
KKLRACAYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKDQVVILDEAHNIEDCARE
SASYSVTETQLRFAREELDTMVVNNIRRKDHDPLRAVCYSLMNWLQESSGQLKERGYETS
CKVWSGKEMLTILHNMGITNATFPILQKHFAAVLEKEEKVSNLHGGDELIEVPIVSPATQ
IMLKGLFMVLLYLFKDNNRFADDYRVALQQTYVWTNEKQLDIPDKNAFFAQPKHQRSSRQ
KTAVHTLNFWCLNPAVAFSDLSGNVRTIVLTSGTLSPMDSFSSELGVKFTIQLEANHVIR
NSQVWVGTIGAGPKGRKLHATFQHTETFEFQDEVGALLLSVCQTVDQGVLCFLPSYKLLD
KLKDRWMHTGLWRNLELVKTVIAEPKGGDKADFDALLQLYYDAIKYKGGKDGALLIAVCR
GKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRKYNDQHSKTRGLLPGSQWYEIQAY
RALNQALGRCIRHKKDWGALMLVDDRFRSNPNKYITGLSKWIRQQIQHHENFSTALDSLD
AFAKKNQVGASSSTQCNSESLLIHSSSKDLSPTSSYEASIHLSPDVPVESKVQNLVLEAH
SPTAINTVNSTASSQSSNSMGTKKNGQNFGVENHSHRTVWREKQMDSKPKSPALKKEREK
RNSWTNADLMKQYFSNKPVTSTPLPVNEKKSISKTMDKQKRSTIESSQPVVNGCQCQSSL
LTEHTPSGPALQLETTSSSIKKGEAAATEEYPASQQLCTSGVIDQCIELSPVRGKIELST
LNVAIEAEAEDDSIYFTPELYDDIESEEQQIEPLIQTCNNTVNQNEHGACIVAEDLFEIS
TSKAVSSTKEIKSNDNMNTELAIIVQNDKIKGNTVSDAESITRVGEVEQKIYQEMDTRKK
KSKLSRSRNKGVSSFSLSNTSP
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtagtgtcagaatataccattggtggggtgaagattgtctttccttgcaag
gcttacccttcacagcttgctatgatgaatgcaattgttaaggggttaaattccaggcaa
cattgtttgttggagagccccacaggaagtggtaaaagtttggcgttactttgttctgta
ttatcatggcagcagtctctgcatgagaagtcactggatgagttctcatgtgaaaaggag
tgcaaaaaaccagagacttcattgccatgtcactgtagatgccattcgcaggctgtggct
aatgacactactgcagatgtgaaccgaggtgcttcttgttctttcactacttgtaaagca
gcaacctccgtaaaaagtgaaacaccatcaacagacaaagtaatgaatactcctgctaca
gaacataatacaaaagtcacactgtcttcaaaattatctgcaaagaaatgggcatcttta
catgcagatgaaaatgacgactttcaagtagacaggaaaaggatacgtttattagaaact
gagcagcaggtaagaaaacgtcattgttttgcaaaaggagtgcagtttgtcgatgctttg
gaagtttatcaacagcgaagaaatggggaactgactgttcactcagaaaaaattgctgct
ttctctccaaaaacatctcctggcctctgtacacagtgttcctgttcttctgtaaaagaa
aatggtaaaaatgttagttatgcaaagaggaaggaaaatggaggaaagccacacatcccc
aaaatattttttggaactcgaacacacaagcaaatagctcagattactagagagctgcag
aggacagtatactccagtgtccgtatgacaattctttccagccgggatcatacctgtgtt
catccagtggtatcgagaagtagtaacaggaatgaaaaatgtgcagacttgctggaagga
aaaaatagcgggtcctgtgtttactaccatggtgtgcataaaattagtgaacatcatgct
ctacagtttgcgcgtaagaagtgtcaggcttgggacatagaagatctagtaagcctggga
aagaagctacgtgcatgtgcctattttgcagctcgagaactcatggtgggggcagatatt
gtattttgtccttacaactacctgctggacccacaaataagagagagtatggagattaac
ctaaaagaccaagtagtcattttagatgaagctcataatattgaagattgtgcacgggag
tcagccagttatagtgttacagaaacacagctgagatttgctcgagaagaacttgatacc
atggtcgtcaacaacatcagacggaaggaccatgatcccctgcgggctgtgtgctacagt
ctgatgaattggctacaggaaagctctggtcaacttaaagaaaggggatatgaaacctcc
tgtaaagtttggagtggaaaggaaatgctcaccattttgcacaatatgggaataacaaat
gctacatttcctatcctgcagaaacattttgctgctgtccttgaaaaagaagaaaaagta
tcgaatcttcatggaggagatgagcttattgaggttcctattgtgagccctgccactcag
attatgctaaaagggctattcatggttctactatatctttttaaagataacaacagattt
gcagatgactacagagttgctttgcaacaaacatatgtttggacaaatgaaaagcaactt
gatattccagataaaaatgctttctttgcacaaccaaaacatcagaggagttcacggcag
aaaacagcagtccatacgcttaacttttggtgcttgaatccagctgtggccttttcagat
ttaagtggtaatgtcaggacaattgttctcacgtctggtacgctctctccaatggactca
ttttcttcagaacttggtgtgaagtttactatccaacttgaggcaaatcatgttattcgt
aactctcaggtttgggttggcaccattggggcaggccccaagggtcggaagctgcatgcc
acattccagcatacagagacctttgaattccaggatgaagtgggagcacttctgctttct
gtgtgtcaaactgttgaccaaggggtcttatgctttttgccatcttataaattgctggat
aaattaaaagatcgctggatgcacactggtttatggagaaacttggagctggttaagaca
gtcattgcagagcctaaaggaggagacaaggctgactttgatgcactgctccaattatac
tatgatgcaataaaatataaaggaggaaaagatggagcacttctgatagcagtatgcaga
ggtaaagttagtgaaggcttggatttctctgatgacaatgcccgtgctgttataactatt
ggtattccatttccaaatgtgaaagaccttcaggttgagttaaagaggaaatacaatgac
cagcactcaaagacaagaggccttttaccaggtagccaatggtatgaaattcaagcttat
agagctctcaaccaggcactcggcaggtgtattcgtcacaaaaaggattggggtgctctt
atgttagttgatgaccgcttcaggagtaaccctaataaatacataactggattatccaaa
tggattcgtcaacaaatccagcaccatgagaactttagtactgcactcgattcgttggat
gcatttgctaaaaaaaatcaagtgggcgccagttcttcaacccagtgtaatagtgaatct
ctgctcatacattcaagttcaaaagatctgtcaccaacttcgtcatatgaggcatctatt
catctatcaccagatgttcctgttgaaagtaaggtgcagaatttggtcctggaagctcat
tcacccacagcaatcaacacagttaattctacagcatccagtcaatcaagtaacagcatg
ggaacaaagaaaaatggtcagaattttggtgtagaaaatcattctcaccgaacagtgtgg
agagaaaaacagatggattccaaaccaaaaagtcctgccctcaaaaaagaaagagagaaa
aggaatagttggactaacgctgaccttatgaaacaatacttcagcaataagccagtgact
tcaacacctctgcctgtgaatgaaaagaaatccatctccaaaaccatggacaaacaaaaa
aggagtactattgaatctagtcagcctgttgttaatggatgccagtgccagtcgtcattg
ctaacggaacatacaccgagtggaccggcattacaactggaaacaactagttcctcaata
aaaaagggtgaggctgcagctactgaagaatatcctgcttcacagcaactctgcactagt
ggagtcatagatcaatgcattgagttatctccagtaagaggaaaaattgaactttcaacg
ttaaatgtagccatagaagcagaagctgaggatgacagtatctattttacacctgaactt
tatgatgatatagaatcagaggaacagcaaattgaaccattaattcagacttgtaataat
actgtgaatcagaatgaacatggagcttgcattgtagctgaagatctttttgaaatcagt
acttcaaaagcagtaagctcaactaaagaaataaaaagtaatgataacatgaacacagag
ttagctataatagtgcaaaatgacaagattaagggtaatacagttagtgatgctgaaagt
attactagagtaggagaagtggaacagaaaatatatcaggaaatggacaccagaaaaaag
aaaagtaaactttccagatcacgaaacaaaggtgtgtcttccttctcattgagcaatact
agtccatag
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