Chelonia mydas (green sea turtle): 102931506
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Entry
102931506 CDS
T02989
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102931506 (COL25A1)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102931506 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102931506
NCBI-ProteinID:
XP_043401462
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All DBs
Position
4:complement(33610408..34022927)
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AA seq
724 aa
AA seq
DB search
MLGKSQEAKGQDGNGEPSCLGGQRCCPSWTLPSSSLLAAFLSVVAVASCVYLGVKTSDLH
ARVSAIESAQGDFSAAAAASYQLLPGFSLDQLNSMMQEKVERLLAQKSYEHLAKIRIARE
APPECNCPAGPPGKRGKRGRRGETGPPGQPGPQGPPGPKGEKGDQGDQGPRMVFPKINHG
FLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQ
GFMGPQGPPGQKGSVGVPGVPGIDGHMGEPGLPGEVGESGAPGLKGDPGERGEKGDAGEN
GPKGDMGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPG
LPGLPGTKGERGEAGPPGKGERGEPGVPGPKGKSGESGTRGPKGSKGHPGDKGDSGAIGP
RGPPGQKGDQGATEIIDYNGNIHEALQRITTLTVTGPPGPPGPQGAQGPKGEPGSQGTPG
AEGEQGPKGSKGDVGESGMPGEKGGIGLPGLPGANGMKGEKGDVGLPGPQGPSIIGPSGP
PGPHGSPGPMGPHGLPGPKGASGLDGKPGPRGMDGPVGPHGPAGPKGDRGEKGAVGDPGP
RGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGIKGEKGEPGQPGLDGLDAPCQL
VQYFSFLPTLHAIPLYIVSHSQCKVVFFCADFTLSTNTCMCMNKSAASAIITVSRRHILS
TPGT
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgttggggaaaagccaagaagccaaagggcaggatggcaacggggagccgagctgcctt
gggggacagcgctgctgccctagctggactctgccctccagttcgctgctggctgctttc
ctgtcagtggtggctgtagcctcctgtgtgtatctgggcgtgaagaccagtgatctacat
gcgagggtctctgccatcgagagcgcccaaggggacttctctgctgctgctgctgcttct
taccagctgctgcccggcttctccctggatcagctaaattcaatgatgcaagaaaaagtg
gagcgacttctcgctcagaaatcctacgagcatttggcaaaaataagaatagcaagagaa
gcgcctccagagtgcaactgcccagcaggccctccagggaaacgaggtaagaggggcaga
agaggagagactggacctcctggtcaacccggtcctcaaggtcctcctggtccaaaaggt
gagaagggagatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatggg
tttctctctgctgatcagcagctcattaaacgccgcctcattaagggtgaccaaggacaa
gctggaccccctggtcctccagggccaccaggacccagaggtcctccaggagacactggc
aaagatggcccccgagggatgcctggagtaccgggagagccaggaaaaccaggtgaacaa
gggtttatggggcctcagggacctccaggacaaaagggttctgttggagtgcctggtgtt
ccaggaatagatggacatatgggtgagccaggtttgcctggcgaagtgggagaaagcgga
gcaccagggcttaagggtgaccctggagaacgaggagaaaagggtgatgctggagaaaac
ggacccaaaggtgacatgggtgaaaagggtgatcctggatcttctgctgcaggaattaag
ggagaacctggagaatctggtcggccaggacaaaagggtgaaccaggtcttcctgggctt
cctggactccctgggataaagggtgaaccaggtttcattggtccacagggagaacctgga
ttaccagggttaccaggaacaaagggtgaaagaggagaagcagggcctcctggaaagggt
gagcgaggtgaacctggagttcctgggccaaaggggaaatcaggcgaatctggaactaga
ggcccaaaggggtcaaagggtcatcctggagacaaaggtgattcaggagcaataggtcct
aggggcccgcctggacaaaagggagatcaaggtgcaacagagataattgactacaatggc
aatatccatgaagctctgcagaggattaccaccctaactgtcacgggtccaccagggcca
cccggacctcaaggagcacaaggaccaaagggtgaaccaggatcccaaggaactccagga
gctgaaggggagcagggtcctaaaggctcaaagggggacgtgggtgagtctggcatgcca
ggagaaaagggaggaattggactcccaggcttaccaggagccaatggtatgaaaggagaa
aaaggagatgttggtttgcctggtcctcaaggtccttctatcataggaccctcaggacca
ccagggccgcatgggtcaccaggccctatgggaccccatggactgcctggcccaaaggga
gcatctggcttagacggaaagccaggaccccggggtatggatggcccagtcggtccacat
ggcccagcaggtcctaaaggagatagaggtgaaaagggagctgttggtgaccctggaccc
agaggaccatatggtttgcctggcaaagatggcgagcctggccttgatggtttccctggt
cctcgaggagaaaagggtgacctaggcgaaaagggagaaaagggattccgtggaattaag
ggggaaaaaggggagccaggccagccaggcctggatgggctggatgccccttgccaattg
gtacagtatttctctttcctaccaaccctgcatgcgattcctttgtatatagtcagtcat
tctcagtgtaaagtggtgtttttctgcgcagactttacattatccactaatacatgcatg
tgcatgaacaaatcagctgcttcagcaatcataactgtatcgagaagacacattctgtca
acacctggaacctaa
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