Chelonia mydas (green sea turtle): 102931739
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Entry
102931739 CDS
T02989
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102931739 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102931739 (PATL1)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102931739 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
102931739 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
102931739
NCBI-ProteinID:
XP_037755313
LinkDB
All DBs
Position
6
Genome browser
AA seq
769 aa
AA seq
DB search
MFRYQSLEECPLDEDEDAFQTLGEEDEDIDQFNDDTFGAGAIDDDWQEAHERLAELEDKP
ATARELEDGAVSDEMDLLGHHEENLAERLSKLVIENELEDPAIMQAVQTQPPMQQPGGLN
SSIWDGSAVLRRIRGPLLTQEVPSVSVLEYALPQRPPQGQEDERDLSERALPRRSSSPVI
GSPPVRAVPIGTPPKQATVPNFNQQILCPKPVHIRAPMQQRYPSPYSERMSPNQLCSVPN
SSLLGHPFPPSVTPVFTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLTSMNPKLLQGR
VGQMMSPASGFRAFFGAPPPPAPPPSQQQHPPCPGSHLQNLRPHPQMFRPDTTHLHPQHR
RLLHQRQQQNRNQHRSLNGSAGDRVGHRSSHQEQLRKDPYANLMLQREKDWVSKIQMMQL
QSTDPYLDDFYYQNYFQKLEKVSAAEEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGS
LGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYER
RYLLSLEGERPALMEERKQKICDMYDNLRGKMPGQERPSDDHFVQIMCIRKGKRMVARIL
PFLSTEQAADILMATARNLPFLIKKDAQDEVLLCLLRPFSLILYHLPSGTVTSLLQQLAN
LPQSATAPAPANLHLAAVLQNKFGLSLLYLVLSRGEELQNSSAATELMQDNQWTELMFMA
TRELLRIPEAALAKPVSTPSNLLSLFSRYVDQQKLNVLETKLQLVQGIR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctaccagtccctggaggagtgtcctctggatgaagatgaagatgcctttcag
accctgggcgaggaggatgaagatatcgaccagttcaatgatgacacgttcggagccggt
gctattgatgacgactggcaggaggcacatgagcggctcgcagaactggaagacaagcct
gcgacagctagagagctggaagatggggcggtcagtgatgagatggacctgctggggcac
catgaggagaacctggcagagaggctgagcaagctggtcatcgagaacgagctggaagat
ccagccatcatgcaggctgtgcaaacccagcctccaatgcagcagccaggaggcctcaac
tccagcatctgggatggatctgcagttctgaggcgcatccgaggaccgcttctcactcag
gaggtgccctcggtgtctgtgctggaatatgctctgcctcagagaccaccacagggccag
gaggatgagcgggacctctcggagcgggcactgcccaggcgctcgtcctccccagtcatt
gggagcccccctgtcagggctgtccccatcggcaccccaccaaagcaggccaccgtgccc
aacttcaaccagcagatcctgtgtccaaagcctgttcacatccgggccccgatgcaacag
cgttatccttccccctacagcgagaggatgtccccaaaccagctctgcagtgtcccgaat
tcctccctgctgggccacccgttccctcccagcgtcactcccgttttcacccaccttcag
agagcgcagcttctaggaggagcacaggctggacgaatgtctcccagccagtttgctcgt
gtctctggactcgttggcagccccctcacatccatgaaccccaagttgcttcaaggcaga
gttgggcagatgatgtctccagccagtgggttccgtgccttttttggagcgccaccgcct
cccgcgccacccccatcccagcagcagcaccccccatgtcctgggtcccacttgcagaac
ctaaggcctcaccctcagatgttcagaccagatacaactcaccttcacccgcagcatcgg
cggctcttacatcagagacagcagcagaacaggaaccagcaccgtagtctgaatggctcg
gcgggggaccgagtgggccaccggagcagccatcaggagcagctgcggaaggacccctat
gctaatctcatgttgcagcgggaaaaggactgggtatcaaagatccagatgatgcagttg
caaagcactgacccttacctggatgacttctactatcagaattacttccagaagctggag
aaagtgtcagcggcagaggagatgcacggcgatggccccaagaaagaacgtactaaactc
atcacaccccaggtggccaagttagagcatgcctacaagccagtgcagtttgagggctcg
ctggggaaactcacagtctccagtgtaaataacccccggaaaatgattgacgcggtggtg
acctcccgcagtgaggacgatgagacgaaggagaagcaggttcgagacaagagacgtcag
accctcgtcaccattgagaagacatacagcctcctcctggatgtggaagactatgagagg
cgctacctcctgagcctggagggggagcggccagccctgatggaggagagaaagcagaag
atctgtgacatgtatgacaatctgagggggaaaatgcccggccaagagaggccgagtgac
gaccactttgtgcaaatcatgtgtatccggaaagggaagcgtatggttgcccggatcctg
ccctttctgtccacggagcaagcggctgacatactcatggcaacagccagaaacctgccc
ttcctgatcaagaaggatgctcaggatgaggtgctgctgtgcctgttgaggccattctct
ctcattctctatcatcttccgtcggggacggtcaccagccttctgcagcagctagcgaac
ctacctcagagcgccacggcgccagcacctgccaacctgcacctcgcagctgtgctccag
aacaagtttggcctgtccctgctgtacttggtcctgagtcgtggggaggaattgcagaat
tccagtgctgctacggagctaatgcaggacaaccagtggacggagctgatgttcatggca
acccgagagcttctgcggatccctgaagcagcgctggcaaagccagtatccaccccctct
aacctgctgtcccttttttctcgctatgttgatcagcagaagctgaacgtgctggagaca
aagttgcagttagtgcaggggatacggtag
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