Chelonia mydas (green sea turtle): 102932236
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Entry
102932236 CDS
T02989
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102932236 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102932236 (LIG3)
Enzymes [BR:
cmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102932236 (LIG3)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102932236 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
102932236
NCBI-ProteinID:
XP_037736692
LinkDB
All DBs
Position
17:complement(20215255..20243450)
Genome browser
AA seq
1046 aa
AA seq
DB search
MRHARPAWPRVPDLKPTRGRRRGPRGLGRSVPGRSCPRLPEPVWHRGSCMPAVFKSLFLQ
TARTLLRREGLRLPQRQAFLLRFESCLLRLLAASPFAWFRLLVRNKSLLSAGRNQGACAE
DFAVPSALHVWHRRVCTVPDEMAEQRYCVDYAKRGTAGCKKCKEKILKGMVRIGKVVPNP
FTESGGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEQLQDPEKDMINQYISEASS
KAANTPKKKATIQAKLSPSGQITSPKKELLATPNPSPKKFSGFTAKPGNSDEAPESSSHK
SSLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLQKGTAGDGFHGDLYLT
IKLLLPGVIKSVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETVRIFFEDSKSCPP
AAKSLLTIQEVDEFLTQLSKLSKEDDQQSVLQDITSRCTGNDLKCIIRLIKHDLKMNAGA
KHVLDALDPNAYEAFKASRNLQNVVERVLRNQQEADKLPGLKRTLSVQASLMTPVQPMLA
EACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIP
QAFPGGHSMILDAEVLLIDNKAGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNNTSLM
DRPLRERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLVLKDIKSTY
EPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSQKWCTV
TKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITG
AEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLPQLKELYQLSKEKSDFNIVAEEEG
STASSSGENEGNSRSSTPHKIAKTPPSKSPAKAKKPEGSKAVVRSPAKKAEEKRGEKRKA
AEPDDNRKKMLLDIFTGVKLYLPPSVEDFSKIRRYFVAYDGDLVQEFDTASATHVIGDVD
ENLGAKRVSPDWIWECIRKRRLVAPR
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgcgccatgcccgccctgcgtggccgcgagtcccggatttgaagccgacgcgggggcgg
cggcgcgggccgagggggctgggccggtcagtccccggacgctcctgcccgcggctgccg
gaaccagtgtggcatcgagggagctgtatgccggccgttttcaagagcctcttcttacag
actgccaggacgctcctcagaagggaaggacttcgcctgccccagagacaggcttttctg
ctgagatttgaaagttgccttctgcgtctcctggcggccagcccgtttgcttggttccga
ttgctggtaagaaataagtctctcctttctgccggcagaaaccagggagcttgtgctgaa
gactttgctgttccctcggctttgcatgtttggcatcggagggtctgcacagtccctgat
gagatggcggagcagaggtactgcgtggactatgccaagcgcggcacagccggctgcaag
aaatgtaaggagaagatcttgaaggggatggtgcgcattgggaaggtggtccccaacccc
ttcacagagtcgggcggggagatgaaggagtggtaccatgtgaagtgcatttttgagaag
ctagagagggctcgggccacaacaaagaagattgaagacatcacagacttggagggttgg
gaacagctccaggatccggagaaagatatgataaaccagtatatctcagaggccagttcc
aaggctgcgaacacacctaagaaaaaggcgacaatccaggcgaagctctcccccagcgga
cagataaccagtcccaagaaggagctgctagctacccccaatccatcaccaaagaaattc
tctggcttcacagctaaaccgggcaattctgatgaagcccctgaaagctcttcccacaag
tctagcctctctgcaaagaagtgtgacccaaagcacaaggattgcttgctgcgggagttc
agaaagttgtgcgccatggttgccgagaagcccagctataacgtgaaaacgcaaatcatt
caggacttcttgcaaaaaggaactgcgggagatggcttccatggtgacctctacctgact
attaagctgctattaccaggtgtcattaaaagtgtttacaacttgaacgacaagcagatt
gtcaagctattcagcaggattttcaactgcagccaggaggagatggtccgagacctggag
cagggagatgtttccgaaacggtgcgcatcttttttgaagacagcaagtcctgccctcct
gctgccaaaagtctccttaccatccaggaagtggatgagttcctcactcaactttcaaag
ctttccaaggaggacgaccagcaaagtgtgctgcaggatatcactagcaggtgcacaggg
aatgacctgaaatgcatcatcaggctaataaagcatgatctgaaaatgaatgctggtgca
aagcatgtgttggatgctttagatcctaatgcttatgaggcattcaaagcctcccgcaat
ctccagaatgtggtggagcgagtgctgaggaaccagcaggaggctgacaagttgccaggt
ctgaagcgaaccctcagcgtccaggcctcactgatgacccctgttcaacccatgctggct
gaagcctgcaagtcaattgaatacgccatgaagaagtgccccaatgggatgtatgcagag
atcaaatacgatggggagcgagtccaggtccacaagaatggagatcacttcagctacttc
agccgaagcctcaaacctgtcctccctcacaaagtagcccattttaaggacttcatcccc
caggctttccctggtggacatagtatgatcctggatgcggaagttcttctgattgacaac
aaagcaggcaaaccgctacccttcgggacccttggagtgcataagaaagctgctttccag
gatgccaatgtctgcttgtttgtgtttgactgcatctatttcaataacaccagcctgatg
gacaggcccctgcgtgagcgtcgaaagtttctccatgataacatggtggaaatccccaac
cggatactcttctctgagatgaagcatgtcacgaaagcttcagatctggcagatatgatc
aatcgagtcatccgtgaggggctggaaggactggtgctgaaagatataaagagtacgtac
gagcctggtaaacgtcactggctaaaagtgaaaaaggactatctgaatgaaggtgccatg
gctgacacagcagacttggtggttctgggagctttctatggacaaggcagtaaaggtggg
atgatgtccattttcctcatgggctgctatgaccccaagagccagaaatggtgcacggtg
acaaagtgcgcgggtgggcacgatgatgccaccctggctcgcctgcagaaggagctggac
atggtgaagatcagcaaggatcccagtaaaattccaagctggctgaaaattaacaagatc
tattatccagacttcattgttccagacccaaagaaagccccggtgtgggagatcacaggt
gctgagttctctaaagcagaagcccacactgcagatgggatctccatccgcttccctcgc
tgcacccggatccgagatgacaaagactggaagacggccaccaacctccctcagctcaag
gagctataccagctctccaaggagaagtccgatttcaatatcgtagcagaggaggagggg
tccacagccagcagcagtggcgagaatgagggaaattctaggtcttccacaccccacaaa
attgctaagacacccccaagcaagtcacctgcaaaagccaagaagccagaaggcagcaaa
gcagttgttagatctccggcaaagaaggcggaggaaaagcgaggggagaaacggaaagca
gctgagccggacgacaacagaaagaagatgctgctggacatatttacaggggtgaagctg
tacctaccgccctccgtggaggacttcagcaaaatccgccggtactttgtggcgtatgat
ggagaccttgtgcaagagttcgacactgcctcagcaacacatgtaataggggatgttgat
gagaaccttggagccaagcgcgtctctcctgactggatctgggagtgtatccggaaacgg
aggctagtggccccccgttaa
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