Chelonia mydas (green sea turtle): 102932287
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Entry
102932287 CDS
T02989
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04510
Focal adhesion
cmy04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102932287 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102932287 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102932287 (COL2A1)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102932287 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
102932287
NCBI-ProteinID:
XP_037739973
LinkDB
All DBs
Position
20:complement(5008280..5072397)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVVLLAAAQVILLAVVRCQEGDIQEAGSCVQDGQRYSDKDVWKPEPCRICVC
DTGTILCDEIICEEMRDCPSPEIPFGECCPICPTDQPAVSGQPGPKGQKGEPGDIKDVVG
PRGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGLPGPPGPPGLGG
NFAAQMAAGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGESGTSG
PMGPRGPPGPPGKPGDDGESGKPGKSGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG
SKGEAGAAGAKGEAGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGGPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAPGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGIAGFKGEQGPKGESGPAG
PQGAPGPAGEEGKRGGRGEPGAAGPVGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG
LGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGASGPPGPSGPAGERGEQG
SPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGLQG
ARGLPGTPGTDGPKGATGPSGPNGAQGPPGLQGMPGERGAAGISGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPSGPNGEKGELGPPGPSGAAGARGAPGDRGEPGAPGPAGFAG
PPGADGQPGAKGEQGESGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPPGASGKDGPKGARGDAGPPGRGGDPGLQGAAGPPGEKG
ESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRG
PPGPVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGDRGETGAVGSPGAPGPPGSPG
PVGPTGKQGDRGESGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTG
LQGLPGPPGTSGDQGATGPSGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQVEKGPDPMRYMRADQASSDLRQHDVEVDA
TLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNM
ETGETCVYPNPSSIPKKNWWTSKTKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF
LRLLSTEGSQNITYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALADG
CSKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgtggtgctgctggcagccgcccaggtcatttta
ctagccgttgtcagatgtcaggaaggggatatccaggaggcaggcagctgtgtgcaggat
gggcagaggtatagtgataaggatgtgtggaaacccgagccctgccggatctgtgtctgt
gacactgggactatcctctgcgacgagataatctgcgaagaaatgagagactgtcccagc
cccgagatccccttcggagaatgctgccctatctgcccaactgaccaacctgctgtcagc
gggcaacctggccccaagggacaaaaaggggaacccggtgatattaaagatgtcgtagga
ccaagaggaccacctggaccacagggacctgcaggggaacaaggaccaaggggcgaccgt
ggggataaaggcgaaaaaggtgctcctggccctcggggtagagatggcgaacctggtaca
cctggaaaccccggacccccagggctcccgggtcccccagggccccctgggcttggcgga
aactttgctgctcagatggcggcaggattcgatgagaaggctggtggcgctcagttgggt
gtgatgcagggacctatgggacctatgggaccgcgaggacctccaggaccatcgggagct
cctggccctcaaggatttcaaggcaaccctggagagcctggggaatctggaacttctggt
ccaatgggtccccgagggcctcccggaccacctggaaaacccggtgacgatggcgaatca
ggcaaacctggcaaatctggtgaacgcggatcccctggccctcagggggctcgaggcttc
ccaggaaccccaggtctcccaggagtcaaaggtcacagaggttatcctgggttagacggc
tccaaaggagaagcaggagctgcaggtgctaagggcgaagctggatcacctggtgagaat
ggttctcctggtcccatggggccccgtggtctcccaggtgaaagaggacgtcccggccca
tctggtgctgctggtgctcgtggcaatgacggtctccctggcccagctggcccccctgga
cccgtcggcccctccggagctcctggattccctggcggcccaggctctaagggggaagct
ggccccactggtgctcgtggccctgagggcgctcaaggccccagaggtgaatctggcact
cccggctcccccggaccttcaggggcacccggtaaccctggaaccgacggcatccccggc
gctaaaggatcagccggtgctcctggaattgccggtgcccccgggttccctgggccacgt
gggcctcccgggcctcaaggtgcaactgggcctctgggtcccaaaggtcagacgggagac
cctggcattgcaggcttcaaaggcgaacaaggccccaaaggtgaatcgggccccgcaggg
ccacagggagcacccggcccggctggcgaagaaggcaagagaggtggccgtggtgagccc
ggtgctgctgggcctgttggaccccccggagagagaggctctcctggaaaccgtggcttc
ccaggtcaggatggtctcgctgggcccaagggtgcccctggcgagcgtggtcctgctggc
cttggggggcctaaaggagccactggtgatcctggacgtcccggagaacccggcctgcct
ggcgcgaggggtctcactgggcgccctggtgatgctggtcctcaaggcaaagtcggtcct
tctggtgcccctggtgaggacggtcgccctggcccgccaggcccacaaggtgctcgcggg
cagcctggcgtcatgggtttcccagggccaaaaggtgctaacggcgaggctggtaaagct
ggagagaagggattgcccggcgctcctggtctgagaggtcttcctggcaaagatggtgag
acaggagcttctggcccccccggaccttccgggcctgctggagagaggggtgagcagggc
tcgccaggtccttctggcttccagggactccccggccccccaggtcctccaggcgaaggt
ggcaagccaggagatcagggcgtccctggcgaagctggcaccccaggcctcgtgggtccc
cgaggtgaacgcggcttcccaggtgaacgtggctctccaggttcacaaggtctgcagggt
gctcgagggctccccggaactcctggtaccgatggacccaagggtgcgactggtccatcc
ggccctaatggtgcccaaggtccccctggtctgcaagggatgcccggtgagaggggagca
gctggtatttctggaccaaagggagacaggggtgatgtcggcgagaaaggcccagaaggc
gctcccggcaaggacggcggaagaggtttgacaggtccgatcggcccccctggcccttct
ggccccaacggcgagaagggtgaattgggtcccccaggcccatctggtgctgccggcgcc
cgcggtgccccgggtgatcgtggtgagcctggagcccctggccctgctggatttgctgga
cctcccggcgctgacggccaacccggcgctaaaggtgaacaaggagaatctggccagaag
ggagacgctggggccccgggtccacagggttcttccggtgctcctggtccacagggtccc
actggtgtgactggtcctaaaggagctcgaggtgcgcagggaccccctggagccaccgga
ttccccggcgctgcaggacgtgtcggccctcccggccctaacggtaacccaggccccgct
ggcccaccaggtgcttctggcaaagatggtcccaagggcgctcgtggtgatgcgggccca
ccgggccgtggtggtgaccctggtctccaaggcgctgccggtcctcctggtgagaaggga
gagtccggggaagatggcccacctggggccgatgggccacccggtcctcaaggtttggca
ggccagcgaggtattgtcggtcttcccggccagcgtggtgagagaggtttcccggggctg
ccaggtccctccggtgagcctggcaaacaaggagcccctggaggtgccggcgaccgtggg
ccacctggtcctgtgggccccccaggtctgactggtccctctggtgaacctgggcgcgag
ggcacccccggatctgatggcccccctggcagagatggcgcagctggagtgaagggtgat
cgcggtgagactggtgctgtcggttctccaggtgctcctggccctcctggctccccaggt
ccggttggtccaactggcaaacagggagacagaggagaatctggcgctcaaggccccatg
ggtccctccggacccgcaggcgcacgtggcatgccgggtcctcaaggtcctcgtggtgac
aagggcgaagctggagaggctggtgagagaggtctgaagggtcaccgaggattcactggt
ctgcagggtcttcctggacctcccggtacatctggagatcaaggtgctactggtccttct
ggtccttctggtcccaggggtcccccaggccctgttggtccctctggcaaagatggttca
aatggcatgcccggtccgattggtcctccaggtcctcgtggtcgtagtggcgaaaccgga
cctgctggtccccctggaaaccctggaccccctggacctcctggccccccaggccccggc
attgacatgtcggccttcgccggtttgggccaggttgagaaaggccctgaccctatgcgc
tacatgcgagctgaccaggcctctagcgacctgcgccagcatgatgttgaggtcgacgcc
actctgaaatccctcaacaaccagatcgaaagcatccgcagccccgagggctccaagaag
aacccagcccggacctgccgtgaccttaaactctgccaccctgagtggaagagcggtgac
tactggatcgaccctaaccagggctgtaccttggatgccattaaggttttctgtaacatg
gagactggagagacatgcgtctatcccaacccctccagcattcccaagaagaactggtgg
accagcaagaccaaggagaagaagcatatctggtttggagagaccatcaatggtggattc
cactttagctatggagatgacaacctggcccctaacactgccaacatccagatgaccttc
ctgcgcctcctgtccaccgaaggctcccagaacatcacctatcactgcaagaacagcatt
gcctacatggacgaggcttccggcaacctgaagaaagccatcctgatacagggatccaat
gacgtcgagatcagagctgagggcaacagcagattcacatacagtgccttggcggatggc
tgctcgaaacacactggcaaatggggcaagacagtcattgaataccgatcacagaagacc
tcgcgcctgcccatcatcgatattgcccctatggacattggtggggccgatcaggagttt
ggcgttgacgttgggccagtctgctttttgtaa
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