Chelonia mydas (green sea turtle): 102932313
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Entry
102932313 CDS
T02989
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102932313 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmy03021
]
102932313 (SMARCC1)
03036 Chromosome and associated proteins [BR:
cmy03036
]
102932313 (SMARCC1)
Transcription machinery [BR:
cmy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102932313 (SMARCC1)
Chromosome and associated proteins [BR:
cmy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102932313 (SMARCC1)
PBAF complex
102932313 (SMARCC1)
GBAF(ncBAF) complex
102932313 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
102932313
NCBI-ProteinID:
XP_037747265
LinkDB
All DBs
Position
2:complement(258584619..258776497)
Genome browser
AA seq
1115 aa
AA seq
DB search
MRGGRRVGGAGPRWRRSARVTMAAAVTAGGGPGPGAAAGLAALSVSRRKDGGPTGKFWES
PETVSQLDAVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLP
AKCFMDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCL
SRPTIYLIPDIELKLANKLKDIVKRHQGTVTDEKAKATHHIYPNPTSLDDDEWLRPVMKK
DKQVLVHWGFYPDSYDTWVHASDIEAEIEDAPIPEKPWKVHAKWILDTDIFNEWMNEEDY
EVDENKKPVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPMESRKKTGKK
GQAGLYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVA
DLDEQDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVI
ERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVH
AFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHLRAPQVPAAQQMLSFP
EKNKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVS
EHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVV
DPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARTSGKVDPTYGLESSCIAGTG
PDEPEKLDGVEEEKMETETDGQQSEKVESKGESEIEEGDKVQEGENERNPEKEQDSEVTS
DTKSEEKEAEENKENVDACKDKESEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAA
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQ
LKYAELRARQQMEQQHSQNTQQSHQHSSGPGMNPLGAPGHPGMLPHQQPPPYPMMHHQMP
PPHPPQPGQMPGPGSMIPGQAMPGRMMPSVSANIHPTSGGPPPSGMPPMSGNIIGPRVPL
AAPNGMYPPPSQQPPPPADGVTPPTAGATPASAAP
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggagggaggcgagtgggaggcgcagggccgcggtggcggcgctcggcgagagta
acaatggcagcggcagtgactgcaggtggcggccccggccccggggcggcggcggggctg
gcggccctgtccgtgtcgcggcggaaggacggcggccccacgggcaagttctgggagagc
ccggagacggtgtcccagctggacgcggtgcgggtctggctggggaagcactacaagaag
tatgttcaggcagatgctccgaccaataaaacattggctgggctggtggtgcagctgctg
cagttccaggaagatgcctttgggaaacatgtcaccaatcctgccttcaccaaacttcct
gccaagtgtttcatggatttcaaagctggaggtacattatgtcatattcttggtgctgct
tacaagtataagaatgaacagggctggcggaggtttgatctgcagaatccatcgcgaatg
gatcgaaatgtggagatgttcatgaacattgaaaaaacactagtgcagaataattgtctg
agcagaccaacgatctacctcattccagatatcgaactgaagttggctaataaattaaag
gacattgtcaaacgtcaccagggaaccgtcactgatgagaaggcaaaggcgacccaccat
atttatcctaatcctacctcactggatgatgatgaatggttgagacctgtgatgaagaaa
gataagcaggtgttggtgcactggggcttttacccagacagctatgatacttgggttcat
gctagtgacattgaagctgaaattgaagatgctccaattccagaaaaaccatggaaggtt
catgccaaatggattctggacacagatatattcaatgaatggatgaatgaagaggattat
gaggtggatgagaacaagaagccagtgagttttcgccagcgaatctctatgaagaatgaa
gagcctgtccgtagccctgagagaagagaccggaaagcagcagcaagtaccaggaaaaga
aagcattcaccttcccctccccccactcccatggaatcaaggaagaagactggaaagaaa
ggacaagcaggattgtatgggaaaaggcgaggtcagaaagaagaggatgagcaagaagat
cttaccaaggacatggaggacccaacacctgtaccgaacatagaagaagtggtacttccc
aaaaatgtgaacccaaagaaagacagtgaaaacacgccagtgaaaggaggaacagtagca
gacctggatgagcaggatgaggagacagttgctacaggaggaaaggaagatgaagatccc
aacaaaggtgatcagagtcgatccattgacccaggtgaagacaatgtcacagaacagacc
aatcacataattattccaagctatgcatcatggtttgactacaactgtattcatgtaatt
gaacgccgtgctcttccagagttcttcaatgggaaaaacaagtccaagactccagaaata
tacctggcttaccggaacttcatgattgatacgtatcgcttaaaccctcaggagtacttg
accagcactgcctgcagaaggaacctgactggagatgtatgtgctgtaatgagagtgcat
gcctttctggagcagtggggtctagttaactaccaagtggatccagaaagccgtcccatg
gcaatgggccctcctcctactcctcacttcaatgtgcttgctgataccccctctggactt
atgcctcttcatctccgagctcctcaggtccctgctgcccagcagatgttgagcttccct
gagaaaaacaaagaaaagcctactgacctgcagaactttggacttcgcacagacatttac
tcaaagaagaccttggcaaagagtaagggagccagtgctggaagagaatggacagagcaa
gagacactgctgctactagaggctctggagatgtacaaagatgactggaataaagtctct
gagcacgttgggagtcgcacccaggatgaatgcattctccactttctgagacttcccata
gaggacccttatctggagaactctgatgcatccttaggcccattggcttaccaacctgta
cctttcagccagtctggaaacccagtgatgagcactgttgcttttttggcatctgtggtg
gatcctcgggtggcatcagctgcagctaaagctgctttagaggaattttctcgggtccga
gaggaggtaccactggaactagttgaagcccatgtcaagaaagtgcaggaggcagcgaga
acctctgggaaggtggatccaacatatggactagagagcagctgcattgctggaacaggt
ccagatgagccagagaagcttgatggagttgaagaagaaaaaatggaaactgagacagat
gggcaacagtcagaaaaggttgaaagcaaaggagaaagtgaaatagaggaaggtgataag
gtgcaggaaggagaaaatgagagaaatccagaaaaggagcaggacagtgaagtcacttct
gataccaagtcagaagagaaggaggcagaagagaacaaggaaaacgttgatgcgtgcaaa
gacaaggaaagcgaagctggaaagaagaaagtggaacacgaaatctctgaaggaaatgta
gctacagctgcagctgctgctcttgcctcagctgccaccaaagcaaagcacctagcagca
gtggaagagcgaaagatcaagtccttggtagccctcttggtggaaacacaaatgaagaaa
ctggagatcaaacttcgtcattttgaagagctggaaacaatcatggacagagagaaggag
gcattagagcagcagaggcagcagctgctgacggagcgacagaacttccacatggagcag
ctgaaatatgcagagttaagggctcgccagcaaatggagcagcagcacagtcagaacaca
caacaatcgcaccagcattccagtgggcctggcatgaacccacttggggcaccaggtcat
ccgggcatgctgccccatcagcagccccctccataccctatgatgcaccaccagatgccc
ccccctcatccaccacagccaggacagatgccagggccaggttcaatgatacctgggcag
gccatgccaggccggatgatgccatctgtgtccgccaacatccacccaaccagtggtggc
cctcccccatctggcatgccaccaatgtcaggaaacataattggacctcgtgttccccta
gcagcgccaaatggcatgtatccccctccatcgcagcagccgccgccaccagctgatggg
gtgactccacctacagcaggtgcaacgccggcctcagcagctccctaa
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