Chelonia mydas (green sea turtle): 102933966
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Entry
102933966 CDS
T02989
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04510
Focal adhesion
cmy04512
ECM-receptor interaction
cmy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102933966 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102933966 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102933966 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmy04147
]
102933966 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102933966 (COL4A2)
Exosome [BR:
cmy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102933966 (COL4A2)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102933966 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102933966
NCBI-ProteinID:
XP_037752702
LinkDB
All DBs
Position
1:106416519..106663483
Genome browser
AA seq
1728 aa
AA seq
DB search
MGDEAKMRSSRFLLSRRALWQAMQVVLLLVLTSLLTGRVKAGGKSYTGPCGGRDCSRGCE
CFPEKGGRGQPGLLGPQGFPGPPGLMGIPGLEGHKGHKGERGQPGVTGPKGEVGLRGVTG
FPGADGVPGHPGQPGSRGKPGHDGCNGTRGDAGEQGSQGPSGQPGFFGIQGPKGQKGEPF
VMTPELASKFRGEPGEPGLLGFPGPQGALGVVGLIGPTGNPGRPGPPGPPGPPGPPGNRG
LGFYGEKGEKGEIGPEGPPGLPSTGELVVSPDTILEEQYKGEKGKKGETGEPGTQGLPAY
SAEGGEEGIIGFPGLRGLPGINGIPGAAGEKGFQGFDGMPGSSGPKGMKGEQGERGFQGP
PVYTQYPIRRKGVRGDPGLPGVPGPAGDLGDQGDPGLPGLPGSSDGFPDGSERRGLRGEM
GPKGFSGEPGFLATKPGPPGSDGKPGLPGFPGPPGLPGTPGYPFGLKGRQGDPGEAGSRG
FPGFRGQKGFKGETGDCKCIESEEARRGPAGPPGPPGFPGPTGHPGRKGDNGDQGQHGLP
GFSGAKGFPGAVGFPGPKGEKGDSRYVTTKGTKGDPGGPGLSGIKGEDGFPGKDGIDGLP
GLPGLPGDGVRGSPGDPGYPGTQGEKGFLGEIGLPGAGLPGLKGYHGPPGDSGTYGNPGL
QGPPGPRGTPAQLDCNQVTEDLSRGDGTKTVWSGAECVRAPKGAPGKPGLPGAIGAKGAK
GIPGEPGLDGFQGLKGSQGDPGREGFPGPRGFTGSRGDGGPPGLPGLQGNPGSAGKQGAP
GPAGPKGIAGEVLGAAPGTPGDFGPSGFPGLKGLQGDHGVPGIRGAGGTPGLTGSKGQQG
PPGPLGLPGLPGRPGLHGFPGLPGQQGSPGRTGSPGFVGSLGARGDQGDQGFPGPVGMKG
LAGDKGELGNKGVQGTPGVPGLPGIDGMPGFPGLKGAKGSPGIGGFKGMLGQKGKPGLKG
IKGEVGFFGNLGFKGLQGEPGHKGDRGDQGPAGKPPKIILSMLSEVKGEKGDIGETGLKG
GLGFKGTKGMPGLPGKPGVPGLPGSTSHIEGEKGEAGIKGVTGVQGYPGTIGPPGIRGFP
GTTGIRGEKGIEGIRGDYGRPGFAGQTGDQGDTINLPGSAGLKGEAGVTGSLGVKGTRGD
KGEGGNPGFIGIEGLKGTQGFPGLKGQKGFPGLVGPPGSQGDPGIPGFQGEKGSHGWPGV
AGKAGLPGFRGISGLDGLPGSKGLPGSPGPDAYGAEGFPGIYGDKGEAGNPSTIEGARGA
PGQKGERGNPGERGPVGNLGSDGIPGFPGVSNISGIPGDVGSPGLDGVPGYPGPRGRPGI
LAPGGSKGEDGQIGVLGEDGQKGPRGDPGPPGRTGISGYPGPKGHKGAQGLMGTLGLVGA
FGDTGPTGPKGDRGPTGFQGPPGSPGLPAVPPKLVTHQGTAGPRGNIGPQGISGEMGPHG
PPGDPGFRGPPGKPGFQGRGGMSALPGFRGDQGPSGFPGLAGFEGEPGRPGNPGLPGMPG
RSVNIGYLLVKHSQSEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFST
MPFLYCNPGDVCYYANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVH
SQDVSIPHCPEGWRSLWIGYSFLMHTGAGDEGGGQSLVSPGSCLEDFRATPFIECNGARG
TCHYYANKYSFWLTTINQQFQSLPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgaagcaaagatgagaagctcgcggttcctcctctcacgtcgtgccctttgg
caggctatgcaggtcgtgctgctcttggtgttgacctcactgttaactggcagagtaaaa
gctggtggaaaatcttacacaggaccatgtggaggaagagactgtagtaggggatgtgaa
tgtttccctgaaaaagggggccgtggtcaaccaggactacttggacctcagggattccct
ggaccaccgggattaatgggtatcccaggtttagaaggtcacaaaggtcacaaaggtgaa
agagggcaacctggagtaactggaccaaaaggagaagtggggctaagaggagtaactggt
ttccctggtgcagatggtgttcctggtcatcctggtcagccaggatcaagggggaaacca
ggtcacgatggctgcaatgggaccagaggtgatgctggtgaacaaggaagtcaggggccc
agtggtcaacctggtttctttggaatccaaggaccaaaaggtcagaagggggaacctttt
gtaatgactcctgaactagcaagcaaattcaggggagagcctggtgagccgggattgttg
ggctttccaggacctcaaggtgctctcggtgttgtgggtttaattggtccaacaggaaat
ccaggaagaccaggaccacccgggccaccgggacccccaggaccaccaggcaacaggggc
cttggtttttatggagaaaaaggtgaaaagggtgaaataggtccagagggccctcctggg
cttccatctacgggggagctggtagtttccccagacacaatcctagaagaacaatacaag
ggtgaaaagggaaaaaaaggagaaacaggagaacctggaactcaaggtttacccgcatat
tcagcagaaggtggagaagaaggaataataggttttccaggactaaggggattacctggt
atcaatggcatcccaggagctgctggggaaaaaggttttcaaggatttgatggcatgcca
ggcagcagtggtcctaaaggaatgaagggagagcagggtgagagaggttttcagggacca
cctgtttatactcagtatcccattcgaagaaaaggtgtaagaggtgatccaggattgcca
ggtgttcctggacctgcaggagacctgggggaccaaggagatcctggccttcctggtctt
cctggatcgtcagatggctttcctgatggctctgaaagaagaggtttacgtggggaaatg
ggtcctaaaggttttagtggagaaccaggttttctagcaacaaagccaggtccacccggt
agtgatggtaaacctggacttccaggattccctggcccacctggccttccaggaacgcca
ggctatccttttggactgaagggacgtcaaggggatccaggtgaggcgggcagccgaggt
ttccctgggttccgaggacaaaaaggatttaaaggtgaaacaggggactgtaaatgtatt
gaaagtgaggaagccagacggggtcctgctggtccacctggtccaccaggttttccaggc
ccaactggacatcctgggcggaaaggagataatggagatcaaggtcagcatggtcttcca
ggcttctctggtgcaaaaggatttcccggtgcagtcggatttcctgggccaaaaggggag
aaaggagattctagatatgttacaacaaaaggtaccaaaggagacccaggaggtcctgga
ctatctggcattaaaggtgaagatgggtttccaggaaaagatggtatagatggcttacca
gggcttcctggccttccaggtgatggagtaagaggttcaccaggtgaccctggttatcca
ggaacacaaggtgaaaaaggctttctgggagagattggtctgccaggtgcaggcttacct
ggcctgaaaggataccatggccctccaggtgattctggaacatatggaaatccaggactt
caaggtcccccaggtcctcgaggtacacctgcccaattagattgtaaccaagttactgaa
gatctttctaggggagatggcaccaagacagtttggtcaggggcagaatgcgtgagagca
ccaaaaggagccccaggaaagccaggattgccaggagctataggtgcaaaaggtgctaaa
gggattccaggtgaaccaggtctggatggattccaagggctaaaaggttcacaaggtgat
ccaggtcgtgaaggatttccaggtcctcgaggttttactggatcccggggagatggaggc
ccaccaggtctaccagggctacaggggaatccaggcagtgcaggaaaacaaggtgcccca
gggcctgcaggtccaaaaggaattgcaggtgaagttttaggagcagcaccgggcacccca
ggggattttggaccatctggattcccaggattgaaaggcctacaaggagatcatggagta
ccaggaattagaggagctggtggtactccaggtttgacaggatccaaaggacagcaagga
cccccaggtcctcttggtttgcctggcctgccaggacgaccaggattgcatggattccca
gggcttccaggacagcaaggatctcccggcagaactggctcaccaggatttgttggttca
cttggtgccagaggagatcaaggtgaccaaggttttcctggtccagtgggcatgaaaggt
ctggccggtgacaaaggtgaactcggtaacaaaggagtacaaggaacacctggggtgcct
ggtctcccgggaatagacggaatgcctggttttccagggttaaaaggtgctaaaggttca
cctggtattggaggtttcaaaggtatgttaggccagaaaggaaaaccaggactcaaagga
atcaaaggcgaagttggcttttttggcaatctgggttttaaaggtctacagggggaacca
ggccataaaggtgaccgtggggaccagggtccagcaggaaaaccaccaaagatcatatta
agcatgctgtctgaggttaaaggtgagaaaggagatataggagagactggcctaaaagga
ggtttaggctttaaaggtactaaaggaatgccaggcttacctggcaaaccaggagttcca
ggtttgcctggatcaactagtcacattgaaggtgagaaaggagaggctggtattaaagga
gtgacaggtgttcaggggtatcctggtacaattggacctcctggcatacgaggtttccct
ggtaccactggaatcaggggtgaaaagggtattgaaggaatcagaggtgattatggtaga
cctggctttgctgggcaaactggtgatcaaggagatactataaacttaccaggaagcgca
ggtctgaaaggagaagctggtgtaactggatcattgggtgtgaaaggaaccagaggagat
aaaggtgaaggaggtaatcctggttttattggcattgaaggcctaaaaggcacccaaggt
tttcccggtttaaaagggcaaaaaggcttcccaggactggttggaccaccaggatcacag
ggagacccaggtattcctggatttcaaggtgaaaaaggaagtcatggatggcctggtgta
gcgggaaaagcaggtttacctggcttccgaggaatcagtggattggatggtttgccaggc
agtaagggcttgccaggctccccaggtccagatgcatatggggctgaaggtttcccaggt
atttatggtgacaaaggggaagcaggcaatccgagcactattgaaggcgccagaggagca
ccaggccagaaaggcgagagaggcaatccaggggaacgaggcccagttggtaacctgggg
tctgatggaattccaggctttcctggagtttcaaacatatcaggaatacctggtgatgtg
ggttctccaggtctagatggagtgccaggctatccaggaccacggggcagacctggaatt
ttagctccaggaggaagcaaaggagaagatggtcaaataggtgtgcttggagaagatggt
caaaaaggacctagaggtgaccctggaccaccagggagaactggaatttcagggtaccct
ggaccaaaagggcataaaggcgcacaaggtctcatgggtactcttggcttagtgggagct
tttggtgacacagggcccactggacccaagggggacagaggacctactggttttcaagga
cctccaggttctcctgggctgcctgcagttccccctaagctggtcactcaccagggtaca
gcaggcccacgtggaaatataggtccccaaggaatatctggtgagatggggccccacggt
ccaccaggtgatccaggttttagaggcccaccaggtaagccagggttccaaggaagaggt
ggcatgtcagctcttccaggttttagaggagatcaaggaccatcaggtttcccgggtcta
gcaggctttgagggtgaaccaggccgtccaggtaaccctgggctaccaggtatgccaggt
cgcagtgttaacattgggtaccttctggtgaagcatagccagtctgaacaagagccaatg
tgcccagttggtatgaacaaactctggagtggctacagtctactgtattttgaaggacag
gaaaaagcacataaccaggaccttgggctggctggatcctgtttggctcgttttagtacc
atgcctttcctctactgtaaccctggggatgtctgttattatgcaaacagaaatgataaa
tcctactggctctcaaccacagcacctcttccaatgatgcccgtggcagaagaagaaatt
agaccatatatcagtcgttgttccgtctgtgaagccccagctgttgcaattgctgtccat
agtcaagatgtttctattccgcactgccctgaagggtggcgcagtttatggattggatat
tccttcctcatgcacactggagctggtgatgaaggtggaggacagtcactggtttctcct
gggagctgtctggaagacttcagagctactcctttcattgaatgcaatggtgcccgagga
acctgccactactatgcaaacaagtatagcttctggcttaccactattaaccagcaattc
cagagcttgccctcagcagatacgctcaaggcaggtctcatccgaactcatatcagcaga
tgtcaagtgtgcatgaaaaatttgtaa
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integrated database retrieval system
