Chelonia mydas (green sea turtle): 102934548
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Entry
102934548 CDS
T02989
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102934548 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102934548 (PARN)
Enzymes [BR:
cmy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102934548 (PARN)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102934548 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
T6PP_C
RRM_1
Motif
Other DBs
NCBI-GeneID:
102934548
NCBI-ProteinID:
XP_037765961
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All DBs
Position
10:complement(22086885..22259059)
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AA seq
650 aa
AA seq
DB search
MEIIRSNFKDNLNKVYEAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYQKLKKH
SMDFLLFQFGLCSFKYDHTEAKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQDEERQLREQYDEKRSQANGAATLSYISPNATKCPATIPEDQKKF
IERVVEQIEDLIQNEENKNLQLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKQAKEQEELSDAVGFSRVIHAIANSKGHSSCFGCNNKGKLVVGHN
MLLDVMHTIHQFYCPLPEDLSEFKELAACVFPRLLDTKLMASTQPFKEIINNTSLAELEK
RLKEIPFNPPEVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKNHV
SARSKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAF
GNIQVSWIDDTSAFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKWTE
DSWKEMERKRLKTQYTAYIPESRYYCGNSFTATSTMGKRSMSPIQEETGSDDMEEREIEE
TELDETDCYAESVPEGRKRAKKFKKVKKEQDPTGSITSGSTALFEVPDTW
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggagatcatcaggagcaattttaaggataacctaaataaagtgtatgaagccatcgag
gaagcagactttttggctattgatggcgaattttcaggaatcagtgatgggccatctgtt
agcacattaaccaatggttttgacacaccagaagaaaggtatcaaaaacttaaaaagcat
tccatggatttcttgctttttcagtttggcctttgtagttttaaatatgaccacacagaa
gctaaatacataatgaaatcatttaacttctatatttttccaaaacccttcaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagactttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaatcccatatttaaatcaggatgaggaaaga
caattacgggagcagtatgatgaaaaacgttctcaggcaaatggtgcggcgaccctatcg
tacatttcccctaatgccacaaagtgtcctgcgactattcctgaggatcagaaaaaattc
attgaaagagtggtggagcaaatagaagatttaatacagaatgaagaaaacaagaatttg
cagttggagccatgcacaggatttcagaggaaactaatttatcagactttgagctggaag
tacccaaaaggtatccatgttgaaactctggagacagagaagaaggaaagatacattgtc
attagcaaggtagatgaagaagagcgcaaaagaagagaacagcagaaacaagcaaaagaa
caggaggagctcagtgatgcagtgggattttccagagttattcatgccattgctaattct
aaaggacatagctcttgttttggctgtaacaacaagggcaaacttgttgttggacacaac
atgctactggatgtcatgcacactatccaccagttttactgtcccctgcctgaagaccta
agcgagtttaaggagttagcggcatgtgtctttcccagactattggatactaaactgatg
gcaagtacgcagccttttaaggaaattattaacaacacatcccttgcagaactggaaaag
cgtttaaaagagattccattcaaccctcctgaagttgaaagtgcagaagggtttccaagt
tatgacacagcttctgaacaacttcatgaagcaggctatgatgcttacataacaggactg
tgtttcatctccatggctaactacctaggttcatttctcagtcctccgaaaaatcatgta
tctgctagatcaaaactcattgaacccttttttaacaagttatttcttatgagggtaatg
gacataccatatctcaatttggaaggaccagacttgcagccaaaacgagaccatgttctt
catgttacatttcccaaagagtggaagactagtgatctttaccagcttttcagtgccttt
ggtaatattcaggtatcttggattgatgatacatcagcatttgtgtcacttagccagcca
gaacaagtacaaatagctgtaaacaccagcaggtatgctgaaagttataggatccagacc
tatgcagaatatgttgagaaaaaacatgaagagaaacaggcaaaaagaaagtggacagaa
gatagttggaaggagatggagagaaagcggttaaaaacgcaatacacagcatacattccc
gagagtcggtactactgtggtaacagttttacagctaccagcacaatgggaaaaagaagt
atgagtcctattcaagaggaaactggctctgatgatatggaagagagagaaatcgaagaa
acagagcttgatgaaacagattgctatgcagagtctgttccagagggaaggaagagagcc
aaaaagttcaaaaaagtcaagaaagagcaagatccaacaggaagcatcacaagtggttcc
acagcactctttgaagttcctgacacgtggtag
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