Chelonia mydas (green sea turtle): 102934939
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Entry
102934939 CDS
T02989
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X3
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102934939 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102934939 (PNLDC1)
Enzymes [BR:
cmy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102934939 (PNLDC1)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102934939 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102934939
NCBI-ProteinID:
XP_037751021
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All DBs
Position
3:117244005..117267196
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AA seq
528 aa
AA seq
DB search
MELGTGQFAQSLPHLRALVLGCDFLGFDMEFTGLHSVFPQGKQPSLFDSPAEWYLKARRS
VQKFTVNQLGLSIFSNEKSNKYVARCYNFFLFPTTFGVMDSEFSFQASSIQFLTHYGFDY
NKFLKDGIPYMNQVQEKKLQQGLLAGNWKVRSTLDKDKVKKVIDDVTCWVPSAEEGDSMV
LHNISGFQLFEIQLILRQAIPDVWTEPFGDQKVMVKKVSPRHRWCLENSSYDCCRKELIL
LSARGFTNLFQTLVEAKKPVVGHNMLMDLLHLHDKFYKPLPESYEEFKRNIHSLFPVLID
TKNVTKSIWKEFQFPRASNLLEIYEILCSDLNPTNPTCPVIAHASDCSKYADKKSPHEAA
YDAFLCGSVLLKLAHLLLGSDTLENGPSFSQYLSALTKYLNQVNLIRAGVSKINFSGTDV
PSQRPPLLIASVRGWPGVDEEQIYQILKALCKFDVRRLTENQFLLLSNKFKDVRVVLRDY
KAHPNLRISLYHHWRHSPQVNCLLQICGIVASWSLLAFVFGGSQWYAM
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggagctggggaccgggcagttcgcgcagagcctgccccacctgcgggcgctggtcttg
ggctgcgacttcctggggttcgatatggaattcacaggtttacattcagtctttccacaa
ggcaagcagcccagtctcttcgattcacctgctgagtggtatctgaaggccagacggagt
gttcagaagttcacggtcaatcagctcgggttgtctatattttcaaatgaaaaatcaaac
aagtatgttgcacgctgctataacttcttcctcttccccacaacatttggagtcatggac
tctgaattctctttccaggcatctagcattcagttcctgacgcattacggttttgactat
aataagtttctgaaagatggaatcccatatatgaatcaggttcaggagaagaaacttcag
caagggctcttagctggaaactggaaagttcgcagcactttggacaaggataaagtgaaa
aaggtgattgatgatgtgacatgctgggtgccatcagcagaagagggagactctatggtt
ctacataatattagtggttttcagctatttgagatacagctgattctgagacaggcaatt
ccagatgtttggacagagccttttggagatcagaaggtgatggtgaaaaaggtgagtcca
cggcatcgctggtgtctggagaactcttcttacgactgctgccgaaaggagctcattctt
ctctctgcccggggtttcaccaacctcttccagacccttgttgaagccaagaagccagtg
gtgggacacaacatgctcatggaccttctgcatcttcatgacaagttttacaagcccctc
ccagaaagctatgaggagtttaaaaggaacattcacagcctgtttcctgtcctcatagac
accaagaatgtaacaaaatccatctggaaggaatttcagtttccacgagcatctaacctc
ctagaaatttatgaaatcctgtgcagtgacctaaatcccaccaaccccacatgtccggtg
attgcccatgcaagtgactgttcaaaatatgctgacaagaaatctccccatgaggcggcc
tatgatgcatttctttgtggatcagttcttttgaaattagcccacttgctcctaggcagt
gacacgctggagaatggtccctctttctctcaatatctcagtgcattaaccaagtacctg
aaccaagtgaatctgatccgagctggcgtttcaaaaatcaatttctctggcacagatgtc
cctagccagcgtccacctcttctgattgccagtgttcgggggtggcctggggtggatgaa
gaacagatctatcaaatattaaaagctctgtgcaagtttgatgtcagacgactgaccgaa
aaccaatttctgttgctctccaataagtttaaggatgtcagggttgttctgcgagattat
aaagctcaccccaatctgcggatttcactctatcaccactggagacactcaccacaagtg
aactgcttgctacaaatttgtgggattgtggcatcatggtctcttttggccttcgtgttt
ggaggatctcaatggtatgccatgtaa
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