Chelonia mydas (green sea turtle): 102937571
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Entry
102937571 CDS
T02989
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
cmy
Chelonia mydas (green sea turtle)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
102937571
NCBI-ProteinID:
XP_043383410
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All DBs
Position
13:complement(6225884..6321179)
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AA seq
1476 aa
AA seq
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MLCHRSFLFACITLASHVTGHVHGQGPNRLKLTVLSEDRLQMKWKETEGTISGYKVQVKP
MAGDLEQEVMLKTKTPKATVGGLSPTKEYTLQIYVLNGSQEALFAKRKFVIQELKNISQA
RNTRRNTATSPRKSITPLRNTATEHIPVAKTTSPAPSEASTQTAKDRPEKRRQKAAVSKD
SSETLGRKPNIKFSVTETPTTLKTTLRSPTKSERGDLGQEKHTKGTLKRGPQFQCDTSAT
TDIVLLVDGSWSIGRRNFKLVREFLSTLVSPFNIARDKIRIGLSQYSSDPRTEWNLNTYV
TRDEVLEAVRNLRYKGGNTFTGLALSYVLEQNLKPEAGARSDAVKLVILLTDGKSQDDAN
LSAQTLKNMGIEIFAIGVKNADEAELRQVASEPLELTVYNVLDFPLLSSLVSRLSRVLCT
RIKEKHKSENTDSPVKAVSANTGPHLSPTNLIISEVTSRSMHLSWTPPLRPPKKYRIVYY
PSRGGIPKEVVLDGSTSSTQLVNLTSHTEYLVSVFPIYENAVGDGLRGITSTSLSPPLSL
RALEVSHNSLTLSWQPSSGATQYLVLCSAAPNGAEDDTKEVKVEQPEVLLDGLSPSTEYS
VAVYAMYGEEASDPASIQETTLALSPPRHLSFSEISHGAVKVSWDAASRAVRAHRVTYVS
SRGSNAGEVEVPSSASSTVLRPLSSLTQYFISVSSIYSEGESFPLTGNVTTLKVPPPGDL
KVTELSGNNVRLQWEAAAASDVLVYQIKWNALGEESSQELSVAGNLAAASLPGLKKNTEY
QISIWAYYKDGARSDTVSILHRTTSQSPPTDLVIDSETPNSLQVHWRPPGSHIQYYRVTY
TPESDDSAQQTVMVSGKSSGVTLQSLLPNTAYKVMVSAVHDAGESDAVSTTGQTGRQITS
VLAKLPSTQGSVPFKTEACPTISSTEGSLQGFDMMEAFGLVEKEYASIKGVAMEPYVFSG
TRTYTLFRDIQLTQRTSEVLLSGIPSVHTISILLRLLPETPKVPFAVWQLTDEDFQPLLG
VILDSSKKSLTYFNHDYKADLQEVTFDQQEVKKIFYGSFHKVHIAVSHFRIKLYLDCKKI
AEKPINAMGSISSAGFIMLGKLTGTRGPRSGSAAFQLQSLQIVCSGSWAEEDRCCDLPAL
RNEETCPALTPSCTCTSGIPGPPGPPGSPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEG
PSGQQGSLGSQGITVQGPVGPPGIKGDKGDTGIPGIQGIPGAQGAPGRDGIQGAKGVRGL
EGTAGPPGPPGPRGFQGITGARGSSGERGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQ
LVSQACEQMIQTHVLKFDSFIHEHTRKPVPVWDDTLKPGGPGPPGLPGIAGTRGERGEDG
IPGQPGKDGYPGERGGPGPKGEKGMAGAREEGVQGPRGRAGPPGEQAIGDSGPKGSPGST
GPPGFPGARGNPGAPGYPGGCANSGCYRASIRDFIP
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgtcaccgttccttcttgtttgcctgcataaccttggcgagtcatgtcacagga
cacgtgcatggtcaagggccaaaccggttgaaactaaccgtcctctcggaagaccggcta
cagatgaaatggaaagaaacagaagggaccatcagcgggtacaaggttcaagtgaagccc
atggcaggtgacctggaacaggaagtcatgctgaaaaccaaaacgcctaaggcaacagtg
ggagggctaagccccacgaaggaatacaccctgcaaatctacgtgctcaatggctcccaa
gaagccctgtttgctaaaaggaaatttgtgattcaggagctgaaaaacatctcgcaggct
agaaatacccgaaggaacacagcgacctccccaagaaagagcatcacccctttgagaaat
acagcaaccgagcacattccagtggctaagacaacgtcaccggctccaagtgaagcctca
acacagacagcaaaagacagacctgaaaagagaagacagaaggcagcagtatccaaggac
tcaagtgaaaccctcggaaggaaaccaaacatcaagttcagtgtgacagaaacaccaaca
acgttgaaaacaactctgcgcagtcccacaaaatctgagcgaggagatctaggccaagaa
aaacacacaaagggaactttaaagagaggtcctcagtttcaatgtgacacatctgccaca
actgatattgtcctgctggtggatgggtcttggagtattggacgcagaaacttcaagctt
gtcagggagttcctgagcaccttggtttcacctttcaatattgcccgggataagataagg
ataggtttgtcccagtacagcagtgatccacggacagagtggaacctgaacacctacgtc
acaagggacgaggtgttagaggcggtgaggaacctgcgatataaaggcggcaacactttc
acaggccttgctttgtcctatgtcctagaacaaaatctgaaacctgaagctggtgccagg
tcggatgcagtcaagctggtgatcctcttgactgatggaaaatcacaggatgatgccaac
ctgtctgcccagaccttgaaaaatatgggcatagagatatttgccattggggtgaaaaat
gcagatgaggcagagctgagacaggtggcatcagagcccctggagctcactgtttataac
gtgctggatttccccctgctcagctctctggtcagcaggctcagccgggtcttgtgcacc
aggatcaaagagaagcacaagagtgaaaacacagacagtcctgtgaaagctgtctcagcc
aacactggtccccatctgagtcccaccaaccttataatatcagaggtgacctccagaagc
atgcacctttcctggactcctccgctgagaccaccaaagaaatataggattgtatattac
ccatccaggggaggaatccccaaagaggtagttttagacggatctacctcctccactcag
cttgtcaatttgacctcgcacacagaatacctggtttcggtgtttcctatttatgaaaat
gccgttggagatgggctgaggggcatcacctcgacatctttgtcaccacccctttccctg
cgcgcattggaagtgagccacaacagtctaacactgagctggcagccgtcaagtggagct
actcagtacctggtgctctgttcagcggcccccaatggagcggaggatgataccaaagag
gtgaaagtggaacagcctgaggttctgctggacgggctgtctcccagcacggagtactcc
gtagcagtgtatgcaatgtacggggaagaagcaagtgatccagccagcatccaggaaacc
accttggcactgagccctcctagacacctaagtttctctgagatcagccatggggctgtc
aaggtcagctgggacgcggcttcgcgtgctgtgagagctcaccgtgtgacctacgtctca
agcagagggagcaatgccggggaggtcgaagttcccagcagtgcatcatccactgtgctg
agacctctgtcctctctcacccagtacttcattagtgtcagctccatttatagtgaaggc
gaatcctttccgcttacaggcaatgttaccacattaaaggttccaccaccaggtgacctg
aaggtgactgaactctcaggaaacaatgtccggttgcagtgggaagcagccgctgcctct
gatgtcctggtttatcagattaaatggaatgcacttggagaagagagctcccaggagctg
tctgttgctgggaacctggctgctgccagtttaccaggattgaaaaagaacacagaatac
cagatatcgatctgggcatattacaaggatggagctcgaagcgacactgtctctattctg
cacagaactacttcccagagcccacccaccgatctcgttatagactcggagacccccaat
agcctgcaagtccactggagaccccctggcagccacatacaatactaccgagtaacctac
actcctgaatctgacgacagtgctcagcaaacagtaatggtttccggtaaaagcagcgga
gtgaccctgcagtcgctgcttcccaacacagcatacaaggtgatggtttctgctgtccat
gacgcaggagagagtgatgctgtgtcgacaactggccaaactggtaggcaaatcacttct
gtcttggctaaactgccctcaacacaaggctccgttcccttcaaaacagaggcttgcccc
actatcagttccactgaaggctctctgcaaggatttgacatgatggaggcttttggactg
gtggaaaaagaatatgcctccattaaaggagtggccatggaaccatatgtgttcagcggg
acccgtacttacactctcttcagagatattcagctaacccagagaacaagtgaagtgctt
ctctctgggattccgtctgtgcacaccatcagcatcctactccggctccttccggagact
cccaaagtgccctttgccgtgtggcagctaacagatgaggacttccaaccactcctcggg
gttatacttgactccagtaagaaatccttgacctatttcaatcatgactacaaggctgat
ttacaggaagtcacctttgaccaacaggaagtgaagaagatattctatgggagctttcat
aaggtgcacatagctgtgagccatttcaggatcaaactctacttggactgtaagaaaata
gcggagaaaccgatcaatgctatgggaagcatctcctctgccggcttcatcatgctagga
aaactgacaggaaccagaggacccaggagtgggtcagcagcattccagctgcagtcttta
cagatagtttgcagtggctcatgggcagaggaagatagatgttgtgatctcccggcactg
agaaatgaagagacctgccctgccttaactccttcctgcacctgcacttcaggtatccca
ggcccgccaggtcctccagggtcccctggcagtcctgggagaagaggaccacaaggggaa
caaggggaaccagggccgaagggtgagccaggtcctcctggacaagtcggaccagagggt
cctagtggacaacaagggtcactaggctcccaaggaatcaccgtgcagggcccagtggga
ccaccaggaattaaaggggataaaggagacactggaatcccaggcattcagggtattcct
ggtgcccagggagccccaggcagagacggcattcagggtgcaaagggggtgagaggactg
gaaggcacagcagggcctccggggccaccaggacccaggggtttccaaggaataacaggt
gcccgaggcagtagcggagagcgaggacctccaggtgatgttggacccacaggtctgcct
ggtccaaagggggaaaggggagagaaaggtgaaccacaatccctggccaccatttaccag
ctggttagtcaggcttgtgagcagatgattcagactcatgtgttgaaatttgactcattc
atccacgagcatacaaggaagccagttcctgtgtgggatgacacattgaagccaggagga
cctggaccaccaggtcttccgggtatcgctggtaccagaggagaaagaggagaagacggt
atcccaggacagccaggcaaagatgggtatcctggagaaagaggaggaccaggacccaag
ggtgagaaagggatggctggagccagggaggaaggagttcagggaccaagaggacgagca
ggccctccaggagaacaagccataggggactcaggtccgaagggttcccccgggagcacc
ggtcctccaggttttcctggtgccagaggcaatcctggggcacctggctacccaggtggt
tgtgctaattcaggatgctacagggcaagcataagagatttcatcccctga
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