Chelonia mydas (green sea turtle): 102938017
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Entry
102938017 CDS
T02989
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cmy01001
]
102938017 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cmy04054
]
102938017 (CIITA)
Enzymes [BR:
cmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102938017 (CIITA)
Protein kinases [BR:
cmy01001
]
Serine/threonine kinases: Other
TAF1 family
102938017 (CIITA)
Pattern recognition receptors [BR:
cmy04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102938017 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_4
LRR_6
LRR_14
NB-ARC
LRR_9
nSTAND3
LRR_8
nSTAND_NTPase5
CARD
AAA_16
RsgA_GTPase
AAA_19
AAA_22
FAINT
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
102938017
NCBI-ProteinID:
XP_027676425
LinkDB
All DBs
Position
10:complement(23306540..23377303)
Genome browser
AA seq
1281 aa
AA seq
DB search
MNLFKEILPEVREILSSATTSDVHALLSSMLEKDVISKEYHQTLLQEKDREDLARKISLT
LVEKWDLCLNTLVPLRCLKLYRKMPQDITDNESSLNRGIAASKRQTMDSAVLTENSFLDL
LHSNIDPLHLYSLLDTRLSDEDEESELSTDPEIDTINHDQFSNLDVFYTMESNGSVEESL
FSNTGEAYSRIAGLAEYVLKDQQERQMEDIFGKLILDEMSNETTEGFTEMKKQKCQKRSF
VSTAESYSDASKLKCRRTDAAKRVKEGVCTEGSRAVGDVRTSCQKRVESPGSTVNGTFVA
VPLNSSPANSTSLSHLHMQFSVTSIHPTGKNVVMPVSSGNSNPDCLLVGAKGIQVISGFA
VHPQQIINLPVGNGASNIIIYPVSSSPTETLQISPVYPTTLAAQVDLAVQSILGSPDKNP
SMGPFTYMPETAAVTDHTDEEEMSNERSQIPVVPSEQILKRPKPVEAFCTSLKDYFQDVC
KFMAMDREVTLDHLYIDGALMQGQTETKSGKNITKVMEKELVIYNLEEKEKAAIERSQIF
QVLGGKELETKVVVVLGKAGMGKSILVQKICQDWSNGKFSQFEFVFWFECRRLSLPEKQY
SLKDLLLELFVKPREGSDEVFEYILQNPDKVLLIFDGFEELQDHDGFTHYSDCQSYKELY
SIRELFAGLFQKKILSGCTLLLTARPKDKFNQYLSKVDKIIEMIGFSPQQVESYIARYFE
GLPYSDDAVKLITDCQYLFSHCYSPVMCRFICFLCEMMFEMGDKDLPSTLTSLFVKYLQQ
KLIPTQTDVTAIGNQQHITRLAQLAWYLGEKNQNALKSSLFPSKEVKEFALKYGLVLPFT
FPKHSGNREEEFGSVFSDFVIQNFLSALHLVLTEEIKDKSLTKYLSLPARKKKPHNWLDL
VPRFLPGLLYLQHDPYLCSLSDEHVMKIITKKQKTLLKYIKKIQISDLYPEKLLELLHCV
YETQDSYLLQHVALRLKAELSFLGTLLTPPDVYVLHFILKRSPKEFSLDLRNSGINLQGL
KHLVGLKSVTSFRASLSDTVRLWESLEQTKEYELLKISVEKFGIDPFKAETMKDISDLSD
LVRVQEKMIHCMEDAFGCNINEIPAIKNLRKLEFALGPASGLQGFLKLVEILAAFPSLQH
LDLDALSENEIGDEGTKSLCEVLSELTSLETLNLSQNKITDLGAEQLATALPSLSSLKTL
SLYNNYICDAGAENIARILPAMASLRVLHVQCNKITDAGAQKLTDSLRKCPHIKSVAMWN
PTIPYGVLEHLQQLDSRISLL
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaaagagatcctgcctgaagtcagggaaattctctccagtgccacaacg
tctgatgtccatgcattgctcagctccatgctggagaaagatgttatatccaaggaatac
catcagaccttactccaggaaaaagacagagaagacctagcaaggaagatatctctaacg
cttgtggaaaaatgggacttgtgtttgaacaccttagttcctctccgttgtttaaaactg
taccgtaagatgccacaagacatcacagataatgagtcatctctgaacaggggtatagct
gctagtaaaagacaaaccatggattcggcagttttgactgaaaatagctttcttgatttg
ctgcacagcaatattgatccactgcatctatacagcctcttggacacaaggttatctgat
gaagatgaagaaagtgaactttcaacagaccctgaaattgataccatcaaccatgatcag
ttcagcaatttggatgtcttttatacaatggaaagcaatggaagtgtggaagaatctctc
ttttcaaatacaggggaagcttattctagaatagctggattagcagaatatgtgctcaaa
gatcagcaggagagacagatggaagacatttttggaaaacttattttggatgaaatgtcc
aatgaaaccacagagggttttacagagatgaagaagcagaaatgtcagaaacgatcattc
gtgagcactgcagagagttactctgatgcttccaagctcaaatgcaggagaacggatgca
gcaaagagggtgaaggaaggagtatgtacagaaggcagcagagctgttggggatgtaaga
actagttgccagaaaagagtggagtcccctgggtctacagtgaatggaacttttgtagcg
gtgcctctgaacagctctccagctaactccacctctttgtctcacctgcacatgcagttt
tctgttaccagtatacatccaactggaaaaaatgtcgtgatgcccgtgtcttctggaaat
tccaacccagactgtctgcttgttggtgctaaagggatccaggtgatatccggctttgca
gttcatcctcagcagataattaatttgcctgtagggaatggtgcatccaatattataata
tatccagtgtcctcctcccccactgaaacattacagatatcaccagtttaccccacaacc
ctggctgctcaagtggacttggctgtccaaagcattttggggtctcctgacaaaaacccc
tccatgggcccatttacttatatgccagagactgcagctgtgactgatcatacagatgaa
gaagaaatgtccaatgagagatcacagattcctgttgttccttctgaacaaattctcaaa
agaccaaagccagtagaagctttctgcacgtcacttaaggattatttccaagatgtgtgc
aagttcatggccatggaccgtgaagtaacccttgatcacctttacattgatggggctctc
atgcaaggtcaaactgaaacaaagagtgggaaaaatatcaccaaggtgatggagaaggag
ctggtaatatataatttagaagagaaggaaaaagcagctatagaaagaagccaaatattt
caagtcctgggagggaaagaactagagacaaaagtcgttgtggtgttgggaaaggcagga
atgggtaaaagcattcttgttcaaaagatctgccaagactggtccaatggaaagttttct
cagtttgaatttgtcttttggtttgagtgtagacggctgagcctgcctgaaaagcaatac
agcttgaaggacctgcttcttgagctctttgtcaaacctcgagagggaagcgacgaagtc
ttcgagtacatactgcaaaatcccgataaagtcctcctcatctttgatggtttcgaagag
ttgcaggatcatgatggctttacacattactcagactgccagtcttacaaggagctgtac
agcatcagagagctatttgcagggctcttccagaagaagatactcagtggctgtacttta
ttgctaacagcaagacccaaagacaaatttaatcagtatttatccaaagtggacaagatt
atcgaaatgatagggttctctccacaacaggtagaatcatatatagccagatattttgaa
gggctaccatacagtgatgatgcagtgaaattaatcacagattgtcaatatctgttcagt
cactgctacagccctgtcatgtgtagattcatttgttttctctgcgaaatgatgtttgaa
atgggagacaaagacctgccttcaacacttaccagcctctttgtaaaataccttcagcaa
aagctgatacctacacaaacagatgtgacagccataggaaatcaacagcacattaccagg
ctagctcagttagcctggtatcttggagaaaagaatcaaaatgccctgaagagcagtctt
tttccctctaaagaagttaaggagtttgctctgaaatatggcttagtactgccatttacg
ttcccaaaacattcgggaaacagggaggaagaatttgggagtgtgttctcagattttgtt
atccaaaattttttgagtgcgcttcatctggtgctcacagaagagatcaaggataaaagc
ctcacaaagtacctctcactaccagccaggaagaaaaagcctcataattggttagacttg
gtgcctcgattcttgcctgggttattgtatctccagcatgatccatacctctgttctctt
tcagatgagcatgtaatgaaaatcataaccaagaagcagaagacactcttaaaatacatt
aaaaaaatacagataagtgatctctatccagaaaaactacttgagctcctccactgtgtt
tatgaaacacaggacagctatcttttgcagcatgtggctttaaggctcaaggctgaactt
tcttttctgggcactcttcttacaccccctgatgtctatgtgctgcattttattttaaaa
agatccccaaaggagttttccttggatttgaggaacagtggcattaacctacaagggctg
aaacacctggttggcctaaagagtgtgacatcatttagggcctcccttagtgatacagtc
aggctgtgggagtccttagagcaaacaaaggaatatgagctgctgaagatttccgttgag
aaatttggtattgatccctttaaggcagaaactatgaaggacatcagtgacctttctgac
cttgtacgagtacaagagaaaatgatccactgcatggaagatgcatttggctgcaatatt
aatgaaattcctgccatcaaaaacctcagaaaactagaatttgcgctgggtccagccagc
ggccttcagggattcttaaagcttgttgaaattcttgcagcattcccatctcttcagcat
ttagacttggatgctctgagtgaaaatgaaataggagatgaaggaacaaaaagcctctgt
gaagtattgtctgagctgacatcactggaaacattgaacttatcacagaacaagataaca
gatttgggggcagagcaactagctactgctcttccttccttatcctcgttaaagacactt
agtttgtacaataactacatttgtgatgctggagcggaaaatatagcaagaatacttcct
gcaatggcatctttaagggtgttacatgttcagtgtaacaagataactgatgccggagcc
cagaagctgactgatagcctcagaaaatgcccccacatcaagagtgtggcgatgtggaat
cctactattccctatggagttcttgagcatcttcaacagctagattctagaatcagtttg
ctgtag
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integrated database retrieval system
