Chelonia mydas (green sea turtle): 102938830
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Entry
102938830 CDS
T02989
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmy03021
]
102938830 (SCAF8)
03041 Spliceosome [BR:
cmy03041
]
102938830 (SCAF8)
Transcription machinery [BR:
cmy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102938830 (SCAF8)
Spliceosome [BR:
cmy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102938830 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
MCM
Motif
Other DBs
NCBI-GeneID:
102938830
NCBI-ProteinID:
XP_037750958
LinkDB
All DBs
Position
3:113687777..113770979
Genome browser
AA seq
1552 aa
AA seq
DB search
MTDPLLSXRCLQHSASPCRRRTPPREQALLPADTERRSGRHLYGRCSARAGLVRARPPGA
ALAAASAALGSPELRCLEPVCPPYWCPRCLLLQLLRRVPPSRPGQAEPGKPAAQGGKRRE
AAERSREETATSGPRVPRPLRHPPWRGGPADPERHQPPPRPSPAAISGDEPPGPRLCLNM
EAVKAFNSELYSLNEYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVP
GLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNN
VFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWVS
QIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAAANTLNPLEQNVSFNKKLMDRFDFGEEPELSEEPKKETPTSQLPLVSESVNNSLF
HQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVET
NLDDSMDIQQQDMDIDEGQDVVEEEIFEQEEKKSAVRSRSRTHSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIG
SKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLDGFAEGGMIDQETVNTEWE
TVRSSEAVKENIQTTQSTTVDKNTAVTTQTEAYTQSVTMLQIPVAPAVPAVSLVPPAFPV
TMSVPPPGYSSIPPPPFLRASFNPSQPPPGFMPPPVPPVPPPVVPPPVVPPVVPTSLVQP
PLSITQETMKDVPFGSLVLPVGTVSSSLATPTLSAGSVFNPLPSNKPESEEKGSHLADVQ
ISSSENNRSVQNDVSSSSGLAGGVQPPGVSSSSGRAGGVQPPGVSSSSGRAGGVQPPSVS
SSSALAGGVQPPGVSSSSALAGGVHPPGVSSSSTLAGGVQPPGVSSSCGLMAGVPPPNVS
SSSGLMAGVPPPNVSSSSGLMAGMPPPNVSSSSGLLAGMPPPNVSSSSGLLAGMPPPNVS
SSSGLLAGVPPPNVSSSSGLLIVPPPNVSSSSGLLGMQHPVGVQNIPHLNISSQRMPGMP
LLDLRPGLIPQSPGPRFPLIQPGMPPQRNIPPPTLLDPSLHPPPRGPFPPPGDLFNQTER
HFGTPGRQNVDSISNPEKRLPLGGDSIQQEGDRDYRFPPVENRETLNRPSPVDVRDSIGR
PPVDPREGLGRPPIDGREHFARPHIDMRENFGRPGVDNIGRREHFGFNSEKHWGQRGDYD
EREHNVFPIYGGPKSFHEDRERFRHVNYRFETRSGPSWNRGFEQDAHRDFDDRRRPWERQ
RDRDDRDFNFCREINGNRFGRDRMQNNWIPPPHPRVFEYFEGATSQRKADNIPQVNGENT
ETESQPPNVQVQNDPELYEKLASSSEINKEKSDTEADIESEPVVESTETEGT
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccctcttctttctngccgctgcctgcagcactcagcctccccctgcaggagg
cgcacacccccaagagagcaagcactcttgccagcggacacagagcgacgttctggacgc
cacctctatggtcgctgctctgcgagggccgggctggtgcgcgcgcgaccgccaggggcc
gctctggccgccgcctccgctgctctcggctcccccgagctgcgctgcctggagcccgtg
tgtccgccatattggtgcccgcgctgcctgcttctgcagctgctgcgccgtgtccctcca
tctcgtcccggccaggccgagcccgggaagccggcggcgcagggcgggaagcggcgcgag
gcggccgagcggagcagggaggagacggcaacgagcgggccccgggtcccgcggcctctg
cgccacccgccatggcgaggaggcccggcggaccctgagagacaccagccccctccccgg
cccagcccagccgccatcagcggagacgagccgcccggcccccgcctctgcctcaacatg
gaggccgtgaaagcctttaacagcgagttgtactcgctaaatgaatacaaaccacctatt
tctaaggctaaaatgacacagatcactaaggcagcaatcaaggctataaagttctacaaa
cacgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggtgcct
ggtctctatgtcattgactctattgtgcgacagtcccggcatcagtttgggcaagagaag
gatgtgtttgctcctagattcagcaataatatcatcagcactttccagaatttataccgt
tgtcctggggatgacaagagtaaaattgttagagtgctaaatttgtggcagaagaataat
gtattcaagagtgaaattattcagcctctcctggatatggcagcaggaattcctcctcca
gttgtgactccagttttgcccagtacaacagctgctatgagcaacaatacaccaggaact
cctgtgacacctgttactccagccaatgtggtacaaagtttacctgatccttgggtgtct
caaattgctaatacagacacacttgctgctgttgcacagatcttacagagtccccaaggc
caacagcttcagcagttaatacagacactgcaaatacaacaacagaagccacagccttca
ctacttcaagcgctggatgctggtcttgtcgttcagttacaggccctcacagcacaactt
acagctgcagctgctgctgccaacacacttaatccactggaacagaatgtctcttttaac
aagaagctgatggacaggtttgattttggggaagaacctgaactcagtgaagagcctaaa
aaggaaactcccacttcccaactgcctctagtatcagagtctgtgaacaactcacttttt
catcagctagctgaacaactgcaacaacaaaatttagaacatctccgacagcagctcctg
gaacaacagcagcctcaaaaggcaagccctgaggaaaatcaagagggaaattttggatca
gagcactctgcatcaccatcacaagggagtagccaacagcagtttttagaagtggaaaca
aacctagatgattcaatggatattcaacaacaggacatggatatagatgaagggcaagat
gtagttgaggaagagatctttgaacaagaagaaaagaaatcagctgttcgttcaagatca
agaacacactcgagatctcgttcaaggtcaccaagaaaacggaggtccaggtcacggtct
ggttcccgaaaacgtaaacacagaaaacgttcacgctcaagatcaagagaaaggaagaga
aaatcatctcggtcatactccagtgaaagaagagctagggaaagggaaaaagaacgccag
aaaaagggattgcctcctattcggtctaaaacactaagtgtctgcagtactactctttgg
gttggtcaagtagacaagaaggccacacagcaagatttaactaatttgttcgaagaattt
ggacaaatagaatctattaacatgattcctccaagaggttgtgcatatgtctgcatggtt
catagacaagatgcatatcgtgctcttcagaaacttagttctggatcctacaaaattgga
tctaaaattattaagattgcttgggctttaaataaaggtgtgaaaacagagtacaagcaa
ttttgggatgtggatcttggagtttcatatataccttgggaaaaagtaaaattggatgat
ttggatggctttgctgaaggaggcatgattgaccaggagactgtaaatacagaatgggaa
actgtgaggagctcagaagctgttaaagaaaatatccaaactactcagagtacaactgtc
gataagaatacagctgttacaacacagacagaagcttatactcaatctgtaactatgcta
cagattccggtagctccagctgtgcctgctgttagtttagttccaccagcatttcctgtc
acaatgtctgtcccacctcctggctatagttcaattccaccacctcccttcttgcgggca
agtttcaacccttcacaaccacctcctggttttatgcctcccccggttccaccagtccca
ccacctgttgttccaccacctgttgttccaccagtagtcccaacatctctagtgcagcct
cctctttccattactcaagagacaatgaaagatgttccttttggtagccttgttttacca
gttggcactgtttctagcagtctagccactccaacattatcagcgggaagtgtttttaac
cctcttccaagcaacaaaccagagtcggaagaaaaaggatcacatcttgcagacgttcag
atttcttccagtgaaaacaacagatctgttcaaaatgatgtctcaagcagctccgggctt
gcgggaggagtgcagccacccggtgtctcaagcagctccggacgtgcaggaggagtgcag
ccacccggtgtctcaagcagctccggacgtgcgggaggagtgcagccacccagtgtctca
agcagctccgcacttgcaggaggagtgcagccacccggtgtctcaagcagctccgcactt
gcgggaggagtgcacccacctggtgtctcaagcagctccacacttgcgggaggagtgcag
ccacctggtgtctcaagcagctgtggacttatggcgggagtaccgccaccgaatgtctca
agcagctctggacttatggcgggagtgccgccaccgaacgtctcaagtagctctggactt
atggcgggaatgccgccaccaaacgtctcaagcagctctggacttttggcgggaatgccg
ccaccgaacgtctcaagcagctctggacttttggcaggaatgccgccaccgaacgtctca
agcagctctgggcttttggcaggtgtgccgccacccaatgtctcaagcagctctgggctt
ctaatagtgccaccacccaatgtctcaagtagttctggacttctggggatgcagcatccg
gtgggggttcaaaacataccccatttaaatattagtagtcaaaggatgcctggaatgcct
ctcttagatctccgtccaggactaataccccagtcacctggaccaagatttccattaata
cagcctggaatgccaccacagcgtaatatccctcctccaacactccttgacccatccctt
catccaccaccgagaggtccttttcctcctccaggagatctttttaaccaaacagagaga
cattttggaacacctggaagacaaaacgttgatagcatttctaatccagaaaaaaggtta
ccacttggaggtgatagcattcaacaggaaggagaccgagactatcgctttccaccagtg
gaaaacagagagactcttaataggccatccccagtcgatgtcagggattctattggacgg
ccaccagtagatccaagagagggtctaggaagacctccaatagatggaagagaacatttt
gcaaggccacatatagatatgagagagaattttggaagaccaggtgtggataatattggt
cgaagagagcattttggttttaattcagaaaagcattggggacagagaggagattatgat
gaaagagaacacaatgtttttcctatctatggtggtcctaaaagcttccatgaagataga
gagaggtttcggcatgtaaattacagatttgaaactagaagtggtcccagctggaacaga
ggatttgaacaagatgctcacagagattttgatgaccgtagaagaccctgggaaagacag
agggatagggatgacagagattttaatttttgcagagaaataaatggaaacagatttgga
agagacagaatgcagaacaactggatccctcctccacatccaagggtttttgaatatttt
gaaggggccacttcacagcgtaaagctgataatataccccaggtaaatggtgaaaataca
gagacagaaagtcagccaccaaatgtgcaagtgcagaatgatccagaactttatgaaaaa
ctagcatcttcaagtgagataaacaaagagaagagtgacacagaagctgatatagaaagt
gaaccagtggtagaaagcacagaaactgaggggacataa
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integrated database retrieval system
