Chelonia mydas (green sea turtle): 102938879
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Entry
102938879 CDS
T02989
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X3
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102938879 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmy04131
]
102938879 (VPS8)
Membrane trafficking [BR:
cmy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102938879 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
zf-RING_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
Clathrin
zf-RING_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
102938879
NCBI-ProteinID:
XP_007052672
LinkDB
All DBs
Position
9:48400581..48632370
Genome browser
AA seq
1405 aa
AA seq
DB search
MEPESLGAEQGASLPGPAEELGTLLGQDAALPKLSGGELDRELESKSDLIDDKEFDIPQV
DTPPTLESILNETDDEEESFVLEDPSLLNIDNIDTHSYDTSSLASSDSGDRTHSKRKKKL
PDSFSLHGSVVRLSLLKGISAQIVSAADKVDAGLPTAIAASSLIAVGTSHGLALIFDPNQ
ALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPG
TAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAK
TELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNS
VNPMLAFCRGDVVHFLLVKRDDSGAIHVTKQKQLHLHYDLINFTWINSRTVVLLDSVEKL
HVIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSQALALVGERACYQSISSCGGQI
FYLGTKSVHVMMMRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDANKRKSV
LADRMVEILFHYADRTLKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRTDLLFSQMYDK
LSENSVAKGVFLECLEPYILSDKLMGMTAQVMKDLLLHYQDKNLMEDMEACIVHMDITSL
DIQQVVLLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEKVVMGNK
LLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASADEEVYPYVRTLLHFD
TREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAK
PNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEENRLIPMAEKAE
FYQICEFMYEREHLYDKIIDCYLRDPVRKEEVFNYIHNILSIPGYSAEEKQSVWQKAMKH
IEELLLLSPNKAADLIATHFNDQIEGIIKNLQDQFLLFQFLRSLLDPREGINQDMLQISP
CVTEQFIELLCHYNPDHVLETLQVLEFYRLEETIQITQKHLLHEASSYLLEKKGDVHGAF
LVMLEQLRSKLLMLTCEIEESTELHLLKDIEDTLVKTIALCQRNSHSLNQQQREALWFPL
LEAMMSPQKLSSSTVLCQYSEPLKSLTMQVLNNMAAFIALPSILQRILQDPVYGRGKLGE
IQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASITRGLNPKQDYCCICLQQYK
RRQEMADEIIVFSCGHLYHSLCLLSKECGIETKGQMRWTCYKCNSSNKGGKLSENFSELK
KGNGASLTQTSSESLLDSQQIQAFDQLCRLYRGTSRLALLTELSRTHGGEKHGLLNVSQG
DPALNSVFQNENFQLHLTPPPLTEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgagagcctcggcgcggagcagggcgcctctctcccggggcccgccgaggag
ctggggacgctgctgggccaagatgccgcgctgccgaagctgagcggcggggagctggac
agggagctggagtccaaaagtgacctgatagatgacaaagagtttgatattccccaggtt
gatacccctccaacgctggaaagcatattaaatgagactgatgatgaagaggagtctttc
gttcttgaggatccctctcttttaaacattgataatattgacactcactcctatgacaca
tcttccttggcaagctcggacagtggggacaggacgcactcgaaaagaaagaaaaaactc
cctgattctttctctcttcatggatcggttgtccgtctttctcttctgaaaggaatttct
gcccaaatagtatctgctgcagacaaagtggatgctggtttacctactgcaatagcagcg
tcaagtctgatagcagtggggacttcccatggtttggcattaatttttgatccaaaccag
gctctgcggctttgtctgggcagcactgctgttggggcccagtacggggctatctcagct
ctgagtatcaacaatgactgttcaagactactgtgtggctttgcaaaaggacagattacc
atgtgggatctggctagtgggaaacttttaagatcaataacagatgctcatcccccagga
acagcaattttacacatcaagtttacagatgacccaacgcttgcaatttgcaatgacagt
ggaggctccgtgtttgagctgtcatttaagagagttatgggtgtgagaacatgtgagtct
cgatgtctgttcagtggttccaagggagaagtttgctgtattgagcccttacatgcaaag
actgaattgagagatcatcctatcacccagtactcactactggcaatggcttccctaact
aagattctagtcattggcttgaaaccatctttgaaggtgtggatgacttttccctatggt
cgtatggatccctctagtgtgccactgctggcgtggcattttgttgctgtacagaactct
gtgaaccccatgcttgccttctgtcgaggagatgttgttcattttcttttggtgaagaga
gatgactcaggtgcaatacatgttactaagcaaaagcaacttcatctgcactatgacctg
atcaattttacttggataaactcacgcacagtagtgcttctggacagtgtggagaagctg
catgtgatagatcgccagacgcaggaggagctggagactatagagatttcggaggtgcag
ctagtatataacagtagtcacttcaaatcactggccacaggaggcaatgtcagccaagca
ttggccctggttggggagagagcctgttaccagtccatcagcagctgtggtggtcaaatc
ttctatcttggcacaaagtctgttcatgtgatgatgatgaggagctggagagagagagtg
gatcaccttctgaaacaagactgtcttactgaggccctggctctagcatggtcttttcat
gagggtaaagcaaaggctgtagtagggttgtctggggatgccaataagcgaaagtctgtc
cttgcagaccgaatggttgaaatcctcttccattatgcggatcgaactttgaagaaatgt
cctgaccagggtaaaatccaagttatggagcaacactttcaggatatggtgcctgtcata
gtcgactactgccttttacttcagcgaactgatcttctgttcagccagatgtatgacaaa
ttgagtgagaattcagtggcaaagggtgtttttctggagtgcctggagccttacatttta
agtgataagttgatgggaatgacagctcaagtgatgaaagacttgctgcttcactaccaa
gataagaacctaatggaggacatggaggcctgcattgtgcatatggatatcaccagccta
gacatacagcaggtagttctcctgtgctgggaaaatcatctgtatgatgccatgatctat
gtgtacaacagtggaatgaatgacttcattagtccaatggagaaattgttcaaagtcatt
gctcctccccttaatgctgggaagtctctcacagatgagaaagtcgttatggggaacaaa
ctccttgtgtacataagctgctgcttagcaggtcgtgcttatccactgggtgatattcct
gaagatctggtacccttggttaaaaaccaggtgtttgaatttcttatccgtctccactca
gctgaggcatctgcagatgaagaagtctacccgtatgttcgtacgctgctgcactttgat
accagagagttccttaacgttcttgcactgacttttgaagactttaagaatgacaagcaa
gcagtggagtatcaacaaagaattgtggacatcctgctaaaggttatggtggaaaattct
gatttcaccccatcacaagttggctgtctttttacctttcttgcccggcagctcgctaaa
cccaacaatacgctatttgtaaacaggacgctttttgaccaggtccttgaatttctatgc
agccctgatgacgattcccgacactcagagagacagcaggtccttttagaactattgcaa
gctggagggatagtacaatttgaagagaatcgtctcatccctatggcagaaaaagctgaa
ttctatcaaatttgtgagtttatgtatgaacgggagcatctctatgacaaaatcattgat
tgttacttacgtgatccagtgagaaaggaagaagtgttcaactacatccacaatatccta
tccattcctgggtacagtgccgaggagaagcagtcagtgtggcagaaggctatgaaacac
attgaggagctgctgttactgagcccgaataaagcggcagacctgatagccactcacttc
aatgaccagattgagggaatcattaaaaatcttcaggaccaattcttgcttttccaattt
ttgagaagtctccttgacccaagggaaggtatcaatcaggacatgctacagatatctccc
tgtgtcactgaacagttcattgagttgttgtgtcactacaatcctgaccatgttttagag
acactgcaggttctggagttctacagactggaagagaccattcagattacccagaaacac
ctgctccatgaagcttcctcctacctgctggagaagaaaggagatgttcatggtgccttc
ctagtaatgcttgagcaactacgaagcaagttgctgatgcttacatgtgaaattgaagaa
tcaacagaactccacttattaaaggatattgaagataccttagtgaaaacaattgcactt
tgccagaggaattcacatagtttaaaccagcagcagcgagaggcactctggtttcccctc
ctggaggctatgatgtcaccacagaagctatccagttcaacagtgttgtgtcagtattct
gaacctctgaagagtttgacaatgcaagtgctaaacaacatggctgcatttattgccctt
ccctcgatcttgcagagaattctccaggatccagtttatggtagagggaaacttggagaa
attcagggacttgtactggggatgctggacacatttaactatgagcaaactcttctagag
acaactactaacctcctgaaccacgatctccactggtccttgtgtaacttgagagcctcc
atcaccagagggcttaacccaaagcaggattactgctgtatctgtctgcagcaatacaag
agaaggcaagagatggctgatgaaatcattgtcttcagttgtggccatttgtaccactca
ctctgtctgctgagtaaagagtgtggcatagaaaccaagggacagatgagatggacttgc
tataaatgcaactcaagtaacaaagggggaaaactaagtgagaatttctcagagctcaaa
aaagggaatggtgcatctttgacacagacaagttcagagtccctgttggattcccagcaa
atccaggcttttgaccaactctgtcgactctatcgaggaacctccaggttagctctcctg
acagaattgtctcgaactcatggtggtgaaaaacatgggctcctcaatgtctctcagggt
gaccctgcactgaacagtgtcttccagaatgagaatttccagctgcatctcactccccct
ccactgacagaagagtag
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integrated database retrieval system
