Chelonia mydas (green sea turtle): 102939754
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Entry
102939754 CDS
T02989
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102939754 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102939754 (BARD1)
04121 Ubiquitin system [BR:
cmy04121
]
102939754 (BARD1)
03036 Chromosome and associated proteins [BR:
cmy03036
]
102939754 (BARD1)
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102939754 (BARD1)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102939754 (BARD1)
Ubiquitin system [BR:
cmy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
102939754 (BARD1)
Chromosome and associated proteins [BR:
cmy03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102939754 (BARD1)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102939754 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
zf-C3HC4_2
NIBRIN_BRCT_II
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
102939754
NCBI-ProteinID:
XP_037768379
LinkDB
All DBs
Position
11:complement(67110602..67174014)
Genome browser
AA seq
800 aa
AA seq
DB search
MRAALRARSGNQPAPAGRAAPSGMERPAGCWDGTRAALRQLERRLRCSRCMNILKEPVCL
GKCEHVFCLACVGDCIGTECPVCHTPAWVQDVQINRQLDNMIQLCSKLRHLLGKDFTDSA
EDLFTSVGPDHETRSKKRQIKMWFSPRSRKIRCVLNSSSLQKQNQLVTNGGSIHQGPSSA
FDFLPSPPQEKPSKMTKEPPPRRSKKKLKKKSLAHINQVWGIEKEKQKEGSGTEGESQDE
FKEKTVTFCSQPLVLCSPEPNNMEETIGQESVTETDRKDGSVSHLEMATQVKPTEDKDSS
AQVNTMNTEKPLPSENEITPLKRRRQQSISPTVCHSKRLRRSDQSADTQSVNQGVCNPAV
TAMSTIKISPTTKHGTPVHISSPAFKLTGGTVSKTRSSAIFQEINSPSLSKTPSTPFTSN
TRNQVETTHSPSLLKKSPSNNTTTKRNHRGETLLHVASIKGDVSAVEHLLKNGADPNVKD
HAGWTPLHEACNHGHKKVVELLLQHRALVNTTGYQNDSPLHDAAKNGHMSIVELLLSHGA
SQDAVNIFGLRPVDYAETEKMKSVLMLPMKNESYSFSQCGEQASLGHPREGPVVLLGSSL
NSEQQKSLSKLAAVLKARKCVEFNSTVTHVIIADDPMRSTIKGMLAILAGCWVLKFEWVK
ACLQSRIREREEKYEICGGPRRGRLNQDQLLPKLFDGCYFYFWGTFNHHQKNDLIELVKA
AGGQILIRQPKPDSDVTQTINTVAYHAEPGSDQSFCTQYVIYDVSSKYNPDKIRQGKVWM
APSSWLIDCVMSFQLLPVTK
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgcgggctgcgctgcgggctcgctccggcaaccagccggctccggcagggagggccgcg
cccagcggcatggagcggcccgccggctgctgggacggcacccgggccgccctgcggcag
ctggagaggcggctgcgctgctcccgctgcatgaacatccttaaggaacctgtgtgcttg
ggaaaatgtgagcatgtcttctgtctagcttgtgtgggggactgtattggcacagaatgc
ccagtgtgtcacactccagcctgggtacaagatgtgcaaataaataggcagctagacaac
atgatccagctgtgcagcaaactgcgtcacctactgggcaaggacttcacagattctgca
gaagacttgttcacatcagtaggtcctgatcatgaaacaagaagtaagaagaggcagata
aaaatgtggttcagcccacgcagtaggaagatcaggtgtgtgctaaacagcagttccctt
cagaagcagaatcagctggtgactaatggtggtagcattcaccagggcccatcttctgct
tttgacttccttccctctcctcctcaagagaagccttccaagatgaccaaggaaccacca
ccacgcagatcgaagaaaaagctgaagaaaaagagtctagcgcacatcaaccaagtatgg
ggtatagagaaggaaaagcagaaagagggcagtggaactgaaggggagtcccaagatgaa
tttaaagaaaagactgtgaccttttgcagccagccattagttttatgcagtcccgaacca
aataatatggaagagacaataggacaggagtctgtaacggaaaccgaccgtaaggatgga
agtgtgtcccacttggaaatggccacacaagtaaaacccacagaggataaagatagctct
gcacaagttaacacaatgaatacagagaaacctctgccatcagaaaatgaaattactcct
ttaaagcgcagaaggcagcagtccatatcccccactgtttgtcattctaaaagactgaga
agaagtgaccagagtgctgatacgcaatcagtcaaccaaggtgtttgcaatcctgcggta
actgccatgagtactattaaaatctctccaactactaaacatggaactccagttcatatc
tcctctcctgcatttaaacttactggtggcactgtatcaaagacaagaagctctgcaatt
tttcaagaaataaatagcccttcactttcaaaaactccctctaccccattcacttcaaat
actcgtaatcaagtggaaaccacacacagtccttccctcttgaagaagtctcctagtaat
aacacaactaccaaaaggaatcacagaggagagaccttgctccatgttgcttcaatcaag
ggtgatgtatcagccgttgaacacttactgaaaaatggagcagaccccaatgttaaagac
catgctggatggacgccattgcatgaggcttgtaatcacgggcacaagaaggtggtggag
ctattgctacagcaccgggcattggtgaacactactgggtatcagaatgactcaccgctt
catgatgctgccaagaatgggcatatgagcattgttgagctgttgctctcacatggagcc
tcccaggatgcagttaatatattcggtctgcgccctgtggactacgcagaaactgaaaag
atgaagtctgtgctaatgctaccaatgaagaatgaatcatattcatttagtcaatgcggg
gaacaagcaagcctaggccatcctagagaagggcctgttgttttactgggaagcagcctc
aattcagagcaacaaaaatcactgagcaaactcgcagcagttctgaaggctagaaaatgt
gtggagtttaacagcacagtgactcacgtcattatcgctgatgatccaatgcgaagtact
atcaaaggtatgctggccattctggctggatgttgggtcctgaaatttgagtgggtgaag
gcatgtttgcaaagcagaattcgtgaacgagaggagaagtatgaaatctgtggtggccca
cgaagaggcagactcaaccaagaccagctgctgcctaagctgtttgatggttgctacttc
tatttttggggaactttcaaccaccaccagaagaatgatctcatagagctggttaaagca
gcaggaggacaaatcctcattaggcagccaaagccagatagcgacgtgacacagaccatc
aacacagtggcataccatgccgaacctggttctgaccagagtttctgcacacaatacgtt
atctatgatgtgtcttctaaatacaacccagataaaattcgccaaggcaaagtctggatg
gccccttccagctggcttatagattgtgtgatgtcatttcagctgttacctgttacaaag
tga
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