Chelonia mydas (green sea turtle): 102940427
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Entry
102940427 CDS
T02989
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04140
Autophagy - animal
cmy04148
Efferocytosis
cmy05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102940427 (VPS18)
04148 Efferocytosis
102940427 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102940427 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmy04131
]
102940427 (VPS18)
Membrane trafficking [BR:
cmy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102940427 (VPS18)
Hops complex
102940427 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-RING_Vps41
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf-RING_UBOX
STX17_N
zf-ANAPC11
zf-RING_2
DUF5600
zf-rbx1
KNOX2
Motif
Other DBs
NCBI-GeneID:
102940427
NCBI-ProteinID:
XP_027673983
LinkDB
All DBs
Position
6:complement(73101047..73118005)
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AA seq
974 aa
AA seq
DB search
MASILDEYEDSLSRSASLQQSRASVGIPHSGYVNARLEKETPIFNKQRIDFTPPEKINSL
VVSCNQLCMSLGRDTLFRIDLGKADEPNQVELGRKDEARVYKMFLDHTGSHLVIALNTSE
CLYLNRSAQKVRTLSRWKGHLIESVGWNKFLGSETNTGPILVGTAQGQIYEAEISVSEGS
LFSTNLDQYFRLAYTLEEEAGPTPVCCLEIERGLDGKCFIIATTRKRLFQFVGKVPEGAE
QQGFGFVFGMHADHLPSFREFPASFGYSEIAFYTPKLRSSPRSFAWMMGNGVLYGTLDYG
RPDSILSDERVWEYPSDVDVAANKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDLFL
EKFGSLKRMIKDPTVGQIWIYTEKVVFRYHVQRESRDVWKMYMNINKFDLAKEYCKDRPE
CLDIVLAREAEHSFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLLKKLASL
KSSEKTQTTLLTTWLTELYLNRLGALEGNTSKRNLFEATREKFCGFLSSPRNKECLFNNR
ASIYELLASHGDTEHMVYFSVIMQDYERVVAHHCQHDDYDEALNVLTRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGTKLDARKLIPALVNYSQSGSTQQISEAIRYMEFCVCELEETE
QAIHNYLLSLYALCRPDSLLSYLEQAGANPNRIHYDLKYALRLCAEHGHHRACVHVYKVM
ELYEEAVDLALQVDVDLAKSCADLPEEDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
NLLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNRHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQAVFPNLPAYKQAKLEDLQK
KLGATSQPSKAHHRPKDTDATSLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEERQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatcctggacgagtacgaagattcgctgtcccgctccgcctccctgcagcag
agccgcgccagcgtgggcatcccgcactccgggtatgtgaatgctcggctggagaaggag
actccaatatttaacaagcaaaggattgatttcactcctccagagaaaattaacagcctt
gtggtctcctgtaaccaactctgtatgagccttggcagagacacccttttcaggattgat
cttggcaaggcagatgaacctaatcaggtagagttgggacgcaaggatgaagccagagtc
tacaagatgtttttggaccacacaggatctcatcttgtgattgcactgaacactagtgaa
tgcctgtatttgaacagaagtgctcagaaggtgcggacgctctcccgctggaaaggtcac
ttgattgaaagtgtgggctggaacaagtttctgggttcagagactaacactggtcctatc
ctggtggggacagcccagggccaaatatatgaggctgagatctctgtcagcgagggaagt
ctcttcagcactaatctggaccagtatttccgactggcctataccttagaggaggaggca
ggaccgaccccagtctgctgtctggaaatagagcgagggctcgatgggaaatgttttatc
attgccactactcgtaagagactcttccagtttgttggcaaagtgcctgagggggcggag
caacagggctttggcttcgtgtttggcatgcatgcagaccacttgcccagcttccgagag
ttcccagccagctttggctacagcgaaatagcattttacactccaaagctacgctcctcc
ccacgctcctttgcctggatgatgggaaatggggtcttgtatggtacattggactatgga
cggcctgactctattctgagtgatgaacgggtctgggagtatccctctgatgtagatgtg
gcagctaacaagccaatctccatagtgctcacccagttccacttcctgctgctactgcct
gacagagtgaaggctgtgtgcactctgaatgggcaggttgtcttccaagacctgttcttg
gagaagtttggctcgttgaagcgcatgatcaaagatcccacagtcgggcagatctggatc
tacacggagaaagttgtattccgctaccacgtacaacgggaatcgagagatgtctggaag
atgtacatgaacattaacaagtttgatctggccaaagagtactgcaaagaccgtcctgag
tgcctagatattgtgttggcaagagaggcagaacactccttccaaaacaagaggtaccta
gatagtgccaagtgttatgcactgacccagaactactttgaagagattgcccttaagttc
attgaagccaagcaggaggaggcattgatggagtttctgctcaagaaactggccagctta
aagtcctctgaaaagacgcagacaactttgctgaccacctggttaacagagctttacttg
aatcggctaggtgctctggaggggaacacctcgaaaaggaatctctttgaggcgactcgg
gagaagttctgcggcttcctgagcagccccagaaacaaagagtgcctgttcaataaccga
gcgtccatctatgagttgctagcaagccatggggacacagaacacatggtctatttttca
gttattatgcaggactatgagagagtggtagcccatcactgccagcatgatgactatgat
gaagccctaaacgtccttaccagacacagagatgagaagctcttttacaagttctctccg
gtcctgatccagcacatccccaagaaggtggttgatgcttggatctccatgggcacgaaa
ctggatgccaggaagctcatacctgccctcgtcaactacagccaaagtgggagcacccaa
cagatcagtgaagctattcgatacatggaattctgtgtgtgtgagctggaggaaaccgag
caagccattcacaactatctgttgtctctctatgctttgtgtcggccagactcgctgcta
tcatatctcgaacaagcaggagccaaccctaacaggatccactatgacctgaagtatgcg
cttcggttgtgtgcagagcatggacaccaccgagcctgtgtccatgtttacaaagtgatg
gagttatatgaggaagcagtggatctagctctgcaggtggatgtggatctagcaaagtcc
tgtgcagacctccctgaagaggatgaggaactacggaagaagctctggttgaaaattgct
cgccacgtggtccaggaagagaaggacgtcaagaaggctatggcctgcctttctagctgc
aacttactaaagattgaagacgtccttcccttcttccctgactttgtcacaatcgaccac
ttcaaggaggcaatctgcaactctctggaggactacaacaggcacattgaggagctgaag
agagagatggaggaagctacacagagtgccaagagaatccgggaggacatccaggagatg
agaaacaaatatggctctgtggagcctcaggagaagtgtgcagcctgtgactttccactc
ctaaaccgccctttctaccttttcctttgcggccacatgttccactatgactgtctgttc
caggcagtttttccaaacctgcctgcctacaagcaagctaagctagaagaccttcagaag
aagctgggagccacaagccagccctccaaagcccatcatcgccccaaggacacagatgcc
accagcttggggaagggacagcagagtcgggagcagatcaaggcagacattgatgatatt
gtagcagctgaatgcgtgtactgtggggagctgatgatccggtccattgacaagcctttc
attgacccacaaaagtatgaggaggagaggcagagttggctgtag
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