Chelonia mydas (green sea turtle): 102940466
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Entry
102940466 CDS
T02989
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X4
KO
K10754
replication factor C subunit 1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03030
DNA replication
cmy03410
Base excision repair
cmy03420
Nucleotide excision repair
cmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102940466 (RFC1)
03410 Base excision repair
102940466 (RFC1)
03420 Nucleotide excision repair
102940466 (RFC1)
03430 Mismatch repair
102940466 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmy03032
]
102940466 (RFC1)
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102940466 (RFC1)
DNA replication proteins [BR:
cmy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102940466 (RFC1)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102940466 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
AAA_14
AAA_5
BRCT_2
AAA_30
RuvB_N
AAA_17
AAA_33
RNA_helicase
AAA_18
nSTAND3
AAA_16
AAA_7
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
102940466
NCBI-ProteinID:
XP_037753859
LinkDB
All DBs
Position
4:97729761..97803782
Genome browser
AA seq
1142 aa
AA seq
DB search
MDIRKFFGVVSTGKKHECERVKKTEKTKNGEESSDGKKKTKDIKVKNSSNEDDSKRKQTN
KKKRIIYDSDSEEEMQSVKKSKKPPGRKPSSSKPDKVLKQDPVVYVSETDDEGDFINKKT
SQKPKENGTSASSCLGTTGARKEDAKPQAKSKPLSPIKLTPTSVLDYFGTSSVHRSEKKL
VASKRKEPSQSRDSLLEDEAIAKQLQLEEDSELERQLHEDEEFARTLAMLDETPKKKKAR
KDLEEKLTISTTKTISNATEKHKLSQKDDTRNYSAKEQAKSESTRPSCPHPETSVGKAVH
SENKTLPLKPSSKLVALKQKEESNKKERETPSAVTKEKIISGKEEKRTPKKQKVSPQKPE
SISPEDSEKKRINYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGSVSKKTNYLIMGRDCGQSKCEKASTLGTKIIHEDGLFDLIRTMPGK
KSKYELAAEAEAKKAKSKWVKTPQKMEPEKRKISPAKKGTDPKKSNSTPEKGGTFRAIKK
ETTEAQKGLDFKQQTMEKKHAPKTEESCVPEISKGRAEGLLWVDKYKPTSLKTVIGQQGD
QSCANKLLRWLQNWHKNTSEEKHAKPNKLGGKDDGTNFKAALLSGPPGVGKTTTAALVCE
ELGYSYVELNASDTRSKNSLKDVVAESLNNTSMKDFCSGTSHSVSMKHVLIMDEVDGMAG
NEDRGGIQELIGLIKTTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSI
AFKEGLKIPAPAMNEIILAANQDIRQVLHNLSMWCTKNKSLTYDEAKADASKAKKDIKLG
PFDVVRKVFAAGEETARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPVAARGNMIKHLML
LSRAADSICDGDLVDRQIRSKQNWNLLPTQAIYSSVLPGELMRGYMSQFPNFPGWLGKFS
STGKHDRIVQELALHMSLRTHTSKRAVNMEYLSYLRDALVRPLTSFGTEGVQDAVTFMDS
YCLMREDVENIMEISSWGSKPSPFSKLDPKVKAAFTRAYNKEAHLTPYTLHAVKTSKRLP
GPGLASEVNEELNADELQSDEDEQDTIESDAMIKQKKAKSSSKLSKAANGEETKKGKRKG
KK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggatatcagaaaattctttggggttgtatctactggcaagaaacatgaatgtgagaga
gtgaaaaagacagagaaaaccaaaaatggggaagagtcttcagatgggaagaagaaaaca
aaggatatcaaggtgaagaattcatctaatgaagatgattccaaacgaaagcagacaaac
aagaaaaaaaggataatctatgattcagattcagaagaggagatgcaatcggtaaagaaa
tctaagaagccaccagggagaaaaccatcctcttcaaaacctgataaagttcttaagcag
gatcctgttgtttatgtttcagagacagatgacgaaggtgacttcattaataagaagact
tcccagaaacccaaggagaatggaacatcagcaagcagctgcctaggaacaacaggagcg
agaaaggaggatgcaaaaccacaagctaaaagtaaacctttatctccaataaaattgacg
ccaacctcagtactcgattactttggaactagtagcgtgcatcgatcagaaaagaaattg
gtagcaagcaaaagaaaagaaccttcacaaagcagagattcattgctagaagatgaggct
attgctaagcaactgcagttagaggaagattcagagctagagagacaactgcatgaggat
gaagaatttgccagaactctggccatgttggatgaaacaccaaagaagaaaaaggctcga
aaagatctggaagagaagctaaccatttcgacaaccaagaccatttcaaacgcaacagaa
aaacataaactgtctcaaaaagatgacacaaggaattatagtgcgaaggaacaagctaaa
tctgaaagtacaagaccatcttgtcctcatccagaaacttctgttggtaaagctgtgcac
tcagagaataagaccttgcctttgaaacctagctctaagctggtggctctgaaacaaaaa
gaagagagcaataaaaaggagagagagactcccagtgcagtgacaaaagaaaaaatcatt
tcaggaaaggaagagaagagaacgccaaagaaacagaaagtttctccccaaaagcctgag
tctatcagtcctgaggactctgaaaagaaacgaatcaactaccaggcatatcgaagcttc
cttaatcgagagggtccaaaagcactaggttccaaagagataccgcaaggagctgaaaac
tgcttggagggcctgacgttcgtaattacaggagtcctggagtctattgaacgagatgag
gccaagtctttaattgagcgttatggaggaaaagtgactggtagtgtgagcaagaagaca
aactatctcattatgggacgtgactgtggccagtctaaatgtgagaaggcatcaacatta
gggacaaaaattattcatgaggatggcctatttgatctgattcgaactatgccaggcaaa
aagtccaaatatgaattagcagctgaagcagaggcaaagaaagcaaagtcaaaatgggtc
aagaccccacagaaaatggagcctgaaaaaagaaaaattagcccagctaagaaaggaact
gaccctaaaaaaagcaactccactcctgaaaaaggaggcaccttcagagctataaaaaaa
gaaactactgaagctcagaaaggtctggacttcaagcagcaaactatggagaagaagcat
gccccaaagactgaagagagttgtgttcctgagataagcaaaggaagagcagaggggttg
ctgtgggttgataaatataagcccacatctcttaaaacagtaattggacagcaaggggat
caaagctgtgccaataagttgttacgatggctccaaaactggcacaagaatacttctgag
gaaaaacatgcaaaacccaataaattgggaggcaaagatgatggtactaattttaaagca
gctttgctgtcaggtccaccaggagttggtaaaacgactacagctgctttagtttgtgag
gaactggggtacagctatgtggaactgaatgctagtgacactcgcagtaagaacagtttg
aaggacgtggttgccgaatctttaaataacaccagcatgaaagacttctgttctggaaca
tcccattcagttagcatgaaacatgtattgatcatggatgaagtggatggaatggcaggg
aatgaagacagaggaggaatacaggagttaattggtctgattaaaaccacaaagattcct
atcatctgtatgtgtaatgatcggaaccatcccaagattcgttccctggtccattactgt
tttgatcttcgctttcagagacctcggctagaacagattaagggtgccatgatgtctatt
gcatttaaagaagggttaaagatacccgctccagctatgaatgagataattctggcagca
aatcaggacattaggcaggttttacataatcttagtatgtggtgtacaaaaaataaatca
ctgacctacgatgaggcaaaagctgatgccagcaaagccaaaaaggatatcaaactgggc
ccctttgatgttgtcaggaaggtttttgctgctggagaggaaactgctcgcatgtctctt
atagacaaatccgacctgttcttccatgattactctctagcacctctttttgtccaagaa
aattatgtacatgtgaaacctgttgctgctcgaggtaacatgataaaacacttgatgcta
ctgagcagagcagcagacagtatatgtgatggtgatctagtcgacaggcagattcgcagt
aagcaaaactggaaccttctgcctacgcaggccatttattcgagtgttctccctggggaa
ctaatgagaggttacatgtcacagtttcctaactttccaggctggctggggaaattttca
tccacaggcaaacatgaccggattgttcaagaactggcactgcacatgagtctcagaacc
cacaccagcaagagagcagtaaacatggagtatttgtcatacttgcgggatgcacttgtt
agacccttgacaagctttggtacagaaggtgtacaggatgctgtaacattcatggactcc
tattgcttgatgagagaagatgttgaaaatattatggaaatatccagctggggaagcaaa
cctagtcccttttctaaactggaccccaaggtcaaagcagcttttacacgtgcctataac
aaagaggcacatttgacaccatataccctgcatgcagtaaaaacatctaaacggctgcca
gggcccgggttggcttcagaagtgaatgaagaattgaatgctgacgaattgcagtctgat
gaggatgagcaagatactattgaaagtgatgcaatgatcaagcaaaaaaaggcaaagtcg
tcttccaagctgtcaaaagcagcaaatggagaagaaacaaaaaaaggaaaaaggaaagga
aagaaatga
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