Chelonia mydas (green sea turtle): 102941265
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Entry
102941265 CDS
T02989
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmy03021
]
102941265 (SETX)
Enzymes [BR:
cmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102941265 (SETX)
5.6.2.5 RNA 5'-3' helicase
102941265 (SETX)
Transcription machinery [BR:
cmy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102941265 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
Viral_helicase1
nSTAND3
WavE
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
102941265
NCBI-ProteinID:
XP_037735910
LinkDB
All DBs
Position
16:complement(15570138..15618985)
Genome browser
AA seq
2863 aa
AA seq
DB search
MSTCRWCTPGGSSTTQFLRTYASKTLSPEDRAAANDDLCYCLECVVEYHKARDELPSLLQ
EILWELETSRLIDHFEKSMKTDIEEDDELFIVDDNGETKLSGYTGPDFENNLRVPLLEIL
KYPYLLLHERISELCVEALCKMEQVNFSFQVFDKHPGIYLLLVHPNEVIRRWAILTARNL
GKVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKLILLPSHLYDTTNYKNYW
LGICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKQTDDESIDPFWPALHCFMVILD
QLGSKVWGQLIDPVQAFQTIINNVSYNNEIKNIRNSSRRTKSEPESNYEEEMVTCSQIVY
NYNTEKPKKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGQDMRVHNSTFLWFIPFVQS
LMDLKDLGVAYIVEVIHHLCSEIKGFLSERVQQCDKVSEFFILILVSVVELHRNKKCLHL
LWVSSQEWVEAVVKCAKLPTIAFTRCSEKAPGNATKLTPTISSQASNSVQHACVQLIRSL
LREGYQLGQQTVCKQFLDKLNLLLRGNLPMGWQLNNRETQELQMCLKQVIRSIKDRSSNA
SIPVENSVICTNLPTIAIKQEKGTASDRCQMNIQYRDSLSPPFSLASGSDEACQESSSPR
RRGIWEEEYREMSFNNTKLCVTAECLLTDIKKEPHDRSFQECEHSVSSGATKIHKDTHKN
GNNYQVQGNQNKNNSLLKQCFNTSPQVCDFKSHAILERDETEVRMPECLSAQSCSSSHED
THSSNGKDGSCSPNSCSKFKVDPDKITNLKTQVQNADWATKLLKLMKQSASNSEADQLQS
RSESLCTSKDGSRDQEVNILNEGETSVNFNTSNASENKQENSMNSTFQIKVLSLKQESND
TKADYSNFIKKEAGLEESESGGEEDNIPLDTFIHYLKKKRSLSGRSSSLPKPLLNKDLNT
EIPDQGQSNSGSLCPKRGDLKDQKVSMLRTDKTSANFNSLSSSENKEEIPRNAPLISPLL
IKHESTDRLLDFSRYFKREGDSEEKRNHEDNAAVACDLVKQFGASPLTDSQIDRDLDKLS
LAAYAKGVNFPVDSSQERSVHLSHIKRKVKGAVRSSTKGQSNESSSDADCPKNEVIVISD
SSSDEEKKLDIKKPVKKDVYMCPEKQPLTPDYVSDSANKKEQLETHSSPLPCEEHNSQFF
EFETEDDVFSVWQDSQINDEEVNQAQEQDSNLTSTSKCASDSFELADPINDWGYDTDYIS
DDVIEKAEEVVKRQVDSLSHKEVSKTGTKSEATFQEPAIQGNATAQSENSTQPDAVAKDH
AKNTGLMKPRASASSVSLASKLTIKKSTLSPGKSLAKSKLVRTALRSPRKMSLKTVQNKK
LPQTSSRNTEPCRSTPAVVPPKKVHQCPEPTSTVVKLGLKKAPRKAFELSQRSLDSLAEL
RSYGKAAGAVQTPQKQKTKLIAPQNLVTKHNRKMLACQDLPFRRQIRPTQVGRGKNQIGS
SEGRRKKITEKSDPKHPIKQPVDFDPVSAAGTSEKQKASTAERVCYPSSNDGKKVRKSFS
PGRKEVQTTHMNKMAPHGSKESNMKIEENNMAVPALQIKSCFSSSLNGDYKNEPAEREYV
VPLVSPSTPNFEGATLEVSKPKLNEESDDDLFLTQLDPVDMEMCSQMENVGDIIIASEKE
PVDTEVDAAESLLQNEPLGIVKCKYKDCTEQVEKTVEYCRKHSATASDHLFVKPGLPLRK
PEKPSTTKIFSSNSSSRSANLTKDLENISKHSSSKAKSNVVKSRVSKTGNPKAVSAENQI
VKTPSFNNSLRSQSSSNVLRPQNMQTNSTSCFPNRSALGAHSGQARGLPSFPQANALVTQ
QRDHSIFVTEILKWNYEMFVNFSQFGLPHNLLQSIMVSVPVKFQGYNDYFNTFFPLMMLN
AFETVAQEWIENQKTREKNCYHLHLQNFCADLNRADFTACIRESDLAKQLHPKDDDLIFL
VVPEKQNTFTEESEMESHLVYHVGFVTRFSRASLRETRQNEQHVVCHLSVQTRGNLSYYI
NQPVKCVVVSSLVTTQRRFKGLLLLSRSPLAKPIINPSYTDFCPRDLNVTSESTTSYMRD
YNADQKKAIETAYAMVKEHPRLPRICLIHGPPGTGKSKTIVGLLYRILTERSGNENPAQN
LNAKIKRNRVLVCAPSNAAVDELMKKIILEFKEKCQDRKNPLGNCGDINLVRLGPEKSIS
TDVLRFSLDSQVSHRMNRGQPGRDQDIHRKKEALDRQLDSLSRQRAMDRCDKRQKSQKLD
EEIARLSRERQQLTSQLRQVGGRPQEVQASIILESHIICCTLSTSGGFLLESAFRRQGLD
PFSCVIVDEAGQSCEVETLIPLTHRCSKLVLVGDPKQLPPTVISMKAQEYGYDQSMMARL
HKHLEEQMQQNVTGKLPVLQLTVQYRMHPDICLFPSNYIYGRTLKTDRATEENRCSSDWL
FQPYLVFDVADGHEKRNNDSFANPQEVKLVMEIMKLIKEKKNDIGFRHIGIITPYSAQKK
MIQQELDREFGRGRAGEVDTVDGFQGRQKDCIIVTCVRANSTQGSIGFLASLQRLNVTIT
RARYSLFILGRLTTLMDNKDWNKLIQDAQRRGAIIKTCDKNYKRDAVKILKLKPTLQRPL
SYPPTAALSEKATQMQACLGSDGKNKVPNRKSSNDSGILSARAGLSAQGNGVVRQAPESQ
ALGFKGVTLPTPVQPAVRERPRDPRLARRAEATGKEQASKNSNPSALSNPDVTLSRGPDA
SAAHWGQISTVQPTVSKVEDSNKPNQTVRQPDMPFTASHTVRQDHDWRVSVSSKEARTGS
KEDQKGNEWSKDKDYRTPASRRALEQPPENKDLSEAKRRKVSY
NT seq
8592 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgttggtgtacgcctggtggttcctccaccacccagttcctaagaact
tatgcttccaagactttgtcccctgaagatcgtgcagcagccaatgatgatctctgttac
tgcctggaatgtgtggttgaatatcacaaggcaagggatgaattgccaagcttactgcag
gagatcttatgggagttggaaacctcccgtctcatagaccactttgagaaatccatgaag
acagatattgaagaggatgatgaattatttatagtggatgacaatggggaaactaaactg
tctggttacacaggcccagatttcgagaacaacctgcgtgtacctcttctagaaatactg
aaatacccatacctgctgctacatgaacgaatcagtgagctctgtgttgaggctctttgt
aaaatggaacaagttaacttctcctttcaggtctttgacaaacatccaggcatttatctg
ttgttagtacaccccaatgaagtgattcgtcgatgggccatcctgacagcaagaaattta
gggaaagtcgacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaa
gtcattgagttggggctgtttgacagtcctgatatttatagttcttcaatgattgagaag
ggaaaactcattcttctgccatcccatttgtatgataccaccaactacaaaaactactgg
cttggtatctgtatgttgctaacagtgctggaagaacaagctatggattctttgttgctg
ggtccagataagcagaatgatttcatgcagtctatacttcacaccatggagaaacaaaca
gatgatgaaagcattgatcctttctggccagcgctgcactgttttatggtgattttggat
cagctcgggtctaaagtatggggtcaactcatcgatccagtccaggcctttcaaaccatt
atcaacaatgtcagctacaacaatgaaataaaaaatatacgcaatagttcaaggaggact
aaatctgaaccagagtcaaactatgaggaagaaatggttacttgcagccagatagtgtat
aattataacacagaaaagcccaaaaaggatactggatggaagacagccatttgtccggat
tattgccccaacatgtacgaagatatgcagacattggctaatgtgcttcaatctgatatt
ggccaagatatgcgtgtccacaacagcacatttctatggtttattccttttgttcagtcc
ctaatggacctcaaggacttgggcgtggcttatatagtagaggtcattcaccatctgtgc
tcggaaatcaaaggctttctcagtgaaagagtccagcaatgtgacaaagtttctgaattt
ttcatcctgattttggtgtcagttgttgaactacacagaaataaaaagtgcctgcatttg
ctttgggttagctctcaggaatgggtggaagcagtagtgaaatgtgctaaacttccaact
atagcatttacgcgctgctctgaaaaagcacctggaaacgctactaaacttacaccaaca
atatcttcacaggcttctaactctgtacagcatgcttgcgtgcagctgatacgcagcctt
cttcgagaaggctaccagttagggcaacaaactgtttgcaaacagtttctagataaactc
aatctgcttttgcgtggaaacttacctatgggttggcagctgaacaaccgggaaactcag
gaattgcaaatgtgtttaaagcaggtaataagaagtataaaggacagatcatcaaatgct
tccatacctgtggaaaatagcgtgatctgtacaaatttgcccaccattgctataaagcaa
gagaaagggacagccagtgacaggtgtcagatgaatatacaatacagggatagcctcagt
cccccattttctttagcatctgggagcgatgaggcttgtcaagagagttcttccccaaga
agaagaggtatctgggaagaggaatatagggaaatgtcttttaacaatacaaaattatgt
gtaactgcagaatgccttttgacagatattaaaaaagaacctcatgataggtcatttcag
gaatgtgaacattctgttagctctggagcaacaaaaatacacaaggatacccataaaaat
ggaaacaactaccaagtgcaggggaaccaaaataagaataactccttacttaaacagtgc
ttcaacacaagtcctcaagtctgtgatttcaaaagtcatgctatattggagagagacgaa
acagaagtgaggatgccagagtgtctgagtgctcagtcttgttcgagttctcatgaagac
actcacagctcaaatggaaaggatggaagttgctcccctaattcctgttcaaagtttaag
gtagatcctgataaaatcacaaatttgaaaacccaggtacagaatgctgattgggccaca
aaactgttgaagttaatgaagcaatcagcttcaaattcagaagcagaccaactacagtct
cgctctgagagtctctgtacaagtaaagatggcagcagagatcaggaagtgaatattttg
aatgaaggtgaaacctcagttaactttaatacttcaaacgcttctgaaaataaacaggag
aacagcatgaacagtacttttcaaatcaaggtgctctctcttaagcaggaatcaaatgac
accaaggcagattattcaaatttcattaaaaaagaggctggcttggaagaaagtgaaagt
ggaggtgaagaagacaatattccacttgatacgtttatacattatttaaagaaaaagaga
tccctttcaggaagatcaagttctttgccaaagcctttactgaataaagacctgaacaca
gaaataccagatcaaggacagtctaattctggcagtttatgcccaaagagaggtgacctc
aaagatcaaaaagtgagcatgctacgtacagataaaacttcagcaaattttaacagtcta
tctagttctgaaaataaagaggagatacctaggaatgctcctctaatcagtccgctctta
attaagcatgagtcaactgacagactgttagatttttcaagatattttaaaagagaaggc
gattcagaggaaaaaagaaatcatgaagataatgcagcagttgcatgtgatttggtaaag
caatttggagctagccccttaacagactctcagattgatagagaccttgataaattatcc
ttagccgcttatgccaaaggtgtcaattttcctgttgattcaagccaagaacgctcagta
catctgagtcacattaaaaggaaggtaaaaggtgctgttagatcatccacaaagggccaa
agtaatgagtcctcttctgatgcagattgtcccaagaatgaagtcatcgtcatttcagat
tcctcttctgatgaggaaaaaaagttggatattaagaaaccagtaaaaaaagatgtgtat
atgtgtccagaaaaacagcctttaacacctgactatgtttctgatagtgcaaacaaaaaa
gagcaattggagactcatagctccccgttgccatgtgaggaacataattctcagtttttt
gagtttgaaactgaagatgatgtcttttcagtctggcaagattctcagataaatgatgag
gaagtgaatcaggcacaggaacaagactctaacttgacatcaacaagcaaatgtgcttca
gatagttttgagttggcagatcctataaatgactggggttatgatacagattatatcagt
gatgatgtcattgaaaaagcagaagaggtcgttaaaaggcaggtagattctctgtctcat
aaggaagttagtaaaactggcacgaaatctgaggcaacttttcaagagcctgctatccag
ggaaatgcaactgctcagtctgagaattctactcagccagatgctgttgctaaagaccat
gccaaaaacacaggcttgatgaaacccagagcatctgcatctagtgtatcattagcttca
aagttgactattaaaaaaagcactttaagcccaggcaaaagcttagcaaaatccaagttg
gtaagaactgcccttagaagtcccagaaaaatgagccttaaaactgtgcaaaacaaaaaa
cttcctcagactagttctagaaatactgagccttgcaggtcaacccctgctgtagttcct
ccaaagaaagttcaccagtgtcctgagccaacttcaactgtggtcaaacttggcctaaaa
aaggccccccgcaaagcatttgagttatcccagcgatccttagatagtctggctgaattg
cgcagttatgggaaagctgctggggcagttcagactccacagaaacaaaaaactaaatta
attgctccacagaatctagttacaaaacataatagaaaaatgttagcctgccaagatctt
ccgtttcggaggcagataagacccacacaagtggggagagggaaaaatcagataggaagt
tctgagggcagaaggaaaaaaataactgaaaagtctgatccaaagcacccaataaaacag
cctgtggattttgacccagtatctgctgcgggaactagtgaaaaacaaaaagcgagcaca
gctgagcgggtatgctatccctcaagcaatgacgggaaaaaagtgagaaaaagcttctca
cctgggagaaaggaagtccaaactacacacatgaataaaatggctccgcatggttctaag
gaatctaacatgaaaatagaagaaaacaatatggcagttcctgcattacagatcaaatca
tgtttttcttcatctttaaatggagactacaaaaatgaacctgcagagagagaatatgtt
gtccctctagtttccccatctacacctaactttgagggggcaactttggaagtgagcaag
cctaaattaaatgaagagagtgatgatgatttatttttaactcagttagatcctgtggat
atggaaatgtgttcgcagatggaaaatgttggagatattataatagctagtgaaaaagag
ccagtagacacggaagtagatgctgctgaaagtctgctgcagaatgagcccttaggtatt
gtgaagtgcaagtacaaagattgtacagaacaggtggaaaagacagtggagtactgtagg
aagcattctgccactgcttcagatcatctctttgtcaagccaggtttaccacttcgtaag
cctgaaaaaccttccactactaaaattttcagctcaaatagctcttcacggagtgccaac
ctcacgaaggatcttgaaaatatttcaaagcactcgtcatcaaaagccaagtcaaatgtg
gtaaaatccagagtgtccaagacagggaatccaaaagctgtatcggcagagaaccagata
gtcaagaccccaagtttcaacaatagtcttcggtcccagagttccagcaatgttctccgg
ccccagaacatgcagacaaacagtacttcatgttttcccaacaggtctgccttgggggct
cattcagggcaagcaagaggtctcccttcctttccacaagcaaatgctcttgtcactcaa
cagcgtgatcatagtatttttgttacagagattctgaaatggaactatgaaatgtttgtc
aacttcagccagtttggacttccacataaccttcttcaatcaattatggtctctgttcct
gtcaaatttcagggatacaatgactattttaacacatttttccccttgatgatgctaaat
gcttttgaaacagttgcacaggaatggatagaaaaccagaaaacaagagagaaaaattgt
tatcatttgcacttacaaaatttctgtgctgacttgaatcgagcagattttacagcatgc
attcgggaaagtgatctggcaaaacagcttcatccaaaggatgacgacttgatctttttg
gtggtgcctgaaaaacaaaacacctttacagaagaaagcgagatggagagccatctagtg
tatcatgttggttttgtgacccgcttctcccgtgcatcactccgtgaaacgaggcaaaat
gagcagcatgttgtctgtcacctttctgtccaaactcgaggcaatttgtcatactacata
aatcagccagtgaaatgtgtagtggtcagctctctagtgaccacgcaacgaaggttcaaa
ggtctgctactgttgagcaggagtcctctggctaaacccatcataaatccaagttacact
gacttctgtcccagggatttgaatgtaacttccgagagcactacttcctacatgagagac
tacaatgcagatcagaagaaggctattgaaactgcttatgctatggtgaaggagcatcca
agacttcccagaatctgcctgatccatgggccacctgggacagggaaatcaaaaactatt
gttggactcctgtaccgtattctgacagagaggtctgggaatgagaatccagctcaaaac
ttgaatgccaagatcaagcgaaaccgtgttctggtttgtgcaccatccaatgctgctgtt
gatgaactcatgaaaaagataatcttggaattcaaagaaaaatgccaagacagaaaaaat
cctttgggaaattgtggagatataaacttagtgcgactaggtccagaaaagtcaataagc
actgatgtcctgagattcagcctggacagccaagttagccacaggatgaaccggggacaa
cctggccgtgaccaggatattcacaggaaaaaggaagccctagatcgccagctggacagt
ctctctcggcagcgtgccatggatagatgtgataagaggcagaagagtcaaaagttagat
gaggaaattgccagactttcaagagagcggcaacaactcacttctcagctgaggcaggtt
ggagggcgccctcaggaagtgcaggctagcatcatcttggagtcccacatcatctgttgc
acgttgagcacaagcggaggctttctgctagagtctgcttttcgtcggcaaggacttgac
cctttcagctgtgtcattgtggatgaggcagggcagtcatgtgaggttgaaactctgatt
ccattgactcatcgctgtagtaaacttgtccttgttggagatcccaagcagctccctcct
actgtaatatctatgaaagctcaagagtatggctatgatcagtctatgatggctcgcctg
cacaaacacctggaggaacagatgcagcagaatgttacagggaagctgcccgttttacag
ctgactgtacaatataggatgcatcctgacatctgcctcttcccatccaattacatttat
ggcaggactttaaagactgacagagcaacagaagagaacagatgttcttcagattggcta
ttccagccatacctggtctttgatgtagcagatggccacgagaaacggaataatgactct
tttgctaatccccaggaagtaaagctggtgatggaaataatgaaattgattaaagaaaaa
aagaatgatattggttttcgtcacataggaataatcaccccttacagtgcacagaaaaag
atgattcaacaagaactggacagagagtttggcaggggcagagcgggagaagtagacaca
gttgacgggttccagggtcgacagaaagactgcattatagtgacatgtgtaagagcgaac
agcacacaagggtcaattgggtttctggcaagtcttcagcgtctgaatgttacaattacc
cgagccaggtacagcctcttcatccttggaagactgacaacattaatggacaataaagac
tggaataagctgattcaggatgctcagagaagaggcgctatcatcaagacttgtgacaaa
aactataaaagggatgctgttaaaattctgaagctcaaaccaacattacagcggccactc
tcctatcctcctactgctgcgctgtcagagaaagctactcaaatgcaggcgtgtttgggc
agtgatgggaagaataaggtccccaacagaaaaagcagcaatgactctggaatactctcg
gcccgtgctggcctgtcagcacaaggcaatggagtagtaagacaggcaccagagtctcaa
gctttgggtttcaaaggagtcactcttcccacgccagtgcagcctgctgttcgagagaga
ccacgggatccaagactggctaggagggcagaagcgacagggaaggagcaggcctccaag
aatagcaatccatcagccctgagcaatccagatgtgacattgtcacggggacctgatgca
tcggcagcccactggggtcagatcagcaccgtgcagcctactgtctccaaggtggaagat
tccaacaaacccaaccaaactgtaagacagccggacatgcctttcactgcttcccataca
gttaggcaggaccatgactggagagtttctgtctcctcaaaagaggcaagaactggcagt
aaagaagaccagaaaggtaatgagtggagcaaagacaaggactatcggacccctgcaagc
agaagagcattggaacaacccccagagaacaaagacttgagtgaggccaagaggaggaag
gtctcctattag
DBGET
integrated database retrieval system
