Chelonia mydas (green sea turtle): 102941313
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Entry
102941313 CDS
T02989
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03013
Nucleocytoplasmic transport
cmy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102941313 (UPF2)
03015 mRNA surveillance pathway
102941313 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102941313 (UPF2)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102941313 (UPF2)
mRNA cycle factors
P-body specific factors
102941313 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
102941313
NCBI-ProteinID:
XP_037745242
LinkDB
All DBs
Position
1:333736663..333934132
Genome browser
AA seq
1306 aa
AA seq
DB search
MPAERKKSASMEEKESSLNNKEKDFSERRSVSSREKAKEDVKVGLKRETLKAPEDKKKKL
EEDKRKKEDKERKKKEEDKIKAEEEQKRKEDEEKKKFEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRET
HAHVSVVISFCRHCGDDIAGLVPRKVKNAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKDVAGTEDLELDMENLDINDDNLELDCGDEAE
DLTKKLLDEQVCSGRREGADSIGAENSDGKQAERKQEDEEANTGSHLKLIVDAFLQQLPN
CVNRDLIDKAAMDFCMSMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVA
EDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELAKFKMFSKNDTLHCLKMLLSDFSH
HHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNP
PPAEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDSEVKDYVICCMINIW
NVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGE
LYNYRMVESAVIFRTLYSFTSFGVNPDGTASPLDPPEHLFRIRLVCTILDTCGQYFDRGS
SKRKLDCFLVYFQRYVWWKKNLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESV
RQVQDLEREFLIKLGIVNDKDSKDSITEGENLEEEEEEEEGGAETEEQSGNESEVNEPEE
EECSDNDDEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQAL
DKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTRK
GNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQ
RPAPANTNRERRPRYQHPKGAPNADLIFKTGGSHSSHHPVALSTIS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagccagtatggaagaaaaagaatcttcattaaataac
aaagaaaaagacttcagtgaaaggcgatcagtgagcagtagagagaaagcaaaggaggat
gtgaaggttggcctgaagagagagactctgaaggcacctgaagataaaaagaaaaaactg
gaggaggataaacggaaaaaagaagacaaggagcgaaagaaaaaagaagaggacaagata
aaagctgaagaagagcagaagaggaaagaggatgaagaaaaaaagaaatttgaagaggaa
gagaaaaagaaacaagaagaggaagtaaaacgtcagcaagaggaggcagctgcacaattg
aaggagaaagaggaagcacatcaactccatcaggaagcttgggagcgccatcaagcaaga
aaggaactccgcagcaaaaaccagaatgcaccagacaaccgccctgaggagaatttcttt
agcaggctggactcgagtctgaagaagaacactgcttttgttaagaagctaaaaactatc
acagaacaacagagggactccttgtctcatgattttaatagcctcaatttaagcaagtac
attgcagaagctgtagcttctattgttgaagcaaagctgaaaatatcagatgtgaactgt
gccgtgcacttgtgttctctctttcaccagcgctatgctgattttgctccatcgctactt
caggtttggaaaaagcattttgaagcaaggaaagaagagaaaactcccaacattaccaaa
ctaagaactgacttgcgtttcattgcagaattgacaatagttgggattttcactgataaa
gaaggtctgtctttaatctatgaacagctaaaaaacattattaatgctgatcgagagact
cacgctcatgtttctgtggtaataagcttttgccggcactgtggagatgatattgctggt
ttggtaccaaggaaggttaaaaatgctgcagaaaagtttaacttgagttttcctcctagt
gagataatcagcccagagaagcaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagagagctgcaaaatattgagagacaaaac
aggcgtattctgcactctaaaggagagttgagtgaagatcgacacaagcagtatgaagaa
tttgcaatgtcctatcagaagctgttggcaaattctcagtctctggctgatctgttggat
gaaaatatgccggatcttccccaagagaaaccaacaccagaggaacatgggcctggcatt
gacatttttacccctggcaaacctggagaatatgacctggaagggggcatctgggaagat
gaagatgctcgaaatttctatgagaaccttattgatctaaaagcttttgtgccagccatt
ttgtttaaagataatgaaaaatgttctcagaacaaggactccagcaaggatgagtctaga
gattcaaaagatgccaaggataataaggatgttgctggtactgaggatttggagttggat
atggagaatttggacattaatgatgataacttggagttagactgtggagatgaagcagaa
gatctcacaaaaaagctgcttgatgagcaagtatgctcaggcaggagagagggagcagat
agcatcggagctgaaaatagtgacggaaaacaagctgaaagaaaacaagaggatgaagaa
gccaatactgggtctcacttaaaactgatagtagatgctttccttcagcaactcccaaac
tgtgtcaacagagacctcatagacaaggcagcaatggatttttgcatgagtatgaacaca
aaagccaatagaagaaagttagtacgagctctcttcatagttcctagacaaaggttggat
ttgcttccattttatgcaaggctggttggcacattgcatccctgtatgtctgatgtagca
gaggacctttgttccatgctgaaaggggatttcagatttcatgtgagaaaaaaggaccag
atcaatattgaaacaaaaaataaaactgtgagatttattggagagcttgccaagtttaag
atgttctccaaaaatgacaccctgcattgtttaaagatgcttctgtcagacttttctcat
caccatattgaaatggcatgtactctgctggaaacgtgtggaagattcctatttagatca
ccagagtctcacttaagaacaagcgttcttttggaacaaatgatgagaaagaaacaagca
atgcatctcgacgcacggtatgtcacaatggtggagaatgcatactactactgtaatccc
cctcctgctgaaaaaactgtgaggaagaaacgcccacctctgcaggagtatattcgtaag
cttctttacaaggatctctccaaggtcaccactgagaaggtcctgagacagatgcgcaaa
ttgccctggcaggactctgaagtgaaagattatgttatatgttgtatgatcaacatttgg
aatgtgaaatacaatagtattcactgtgtagctaacctcttagcagggttggtgctttac
caagaggacgttggaattcatgtcgtggatggagtgctagaggatattcgcctaggcatg
gaggttaaccagccgaagtttaatcagcgacggatcagcagtgccaagttcttgggagaa
ctttacaattaccgaatggtagagtcagctgtaatatttcgaactctatattcatttaca
tcatttggtgtgaaccctgatggtactgctagtccactggaccctccagaacatcttttc
cgaattagactggtctgcaccatccttgatacctgtgggcaatattttgacagaggttcc
agcaaacggaagcttgattgctttcttgtgtactttcagaggtatgtttggtggaagaag
aatttggaagtttggacaaaagaccatccgtttcctattgacattgactatatgatcagt
gataccctagaactgctgagaccaaagataaaactctgcaattctctggaagaatccgtc
aggcaggtacaagacttggaacgagaattcttaataaaactaggcattgtgaatgacaaa
gattcaaaagattctataacagaaggagagaacctggaagaagaggaagaggaggaggaa
ggtggagcagagacagaagaacagtctggaaatgaaagtgaagtaaatgagccagaggaa
gaggagtgctcagacaatgacgatgaggagggtgaggaagaagaggaagagaatactgat
tacctcacagactccaataaggaaaatgaaactgatgaagagaacacagaagtaatgatt
aaaggaggaggacttaaacatgttccttgtgtagaggacgaggacttcattcaggcattg
gataaaatgatgctggagaatcttcagcaacggagtggagaatctgtgaaagttcatcag
ctggacgttgctattcctctgcatctcaagagtcagctaaagaagggtccacctttgggt
agtggggaaggagaatcagagtcgggagacacaatgccatttgtcatgttaactcgaaaa
ggcaacaaacagcagtttaagatcctaaatgtgccaatgtcttctcaacttgctgccaac
cactggaatcaacaacaagctgagcaagaggagagaatgagaatgaaaaagctcactctg
gatattaatgaacggcaagaacaagaggactatcaggagatgttacagtctctggcacag
cgtccagctccagcaaatactaatcgtgaacggcggccacgttaccagcatccgaaggga
gcacctaatgcagatctaatctttaaaactggtgggagccattcatcccatcatcctgtt
gccctctctaccatttcttga
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