Chelonia mydas (green sea turtle): 102942321
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Entry
102942321 CDS
T02989
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X2
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102942321 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmy03032
]
102942321 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102942321 (TOPBP1)
DNA replication proteins [BR:
cmy03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
102942321 (TOPBP1)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102942321 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
LIG3_BRCT
RTT107_BRCT_5
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
102942321
NCBI-ProteinID:
XP_007064373
LinkDB
All DBs
Position
2:183744803..183791638
Genome browser
AA seq
1520 aa
AA seq
DB search
MKSDKEPFFVKFIKSSGNTEYFFKALESIKEFQSEEYLQILEEVPALNIKENDKSLYICD
PFSGIVFSHLKKLGCRIVGPQVVIFCMQHQRCVPRAEYPVHNMAMADITISCTSLEKETR
EEVHKYVQMMGGRVYRDLNASVTHLIAGEVGSKKYLVAAALKKPILLPTWIKALWEKSQQ
GMIRYTDISMEDFICPLFRGCTICVTGLSSVDRKEVQRLTTEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVQCVSIQWFFDSIENGFCQDEAMYKTESVQKQNTTPSTSTPTSQ
ASKPDSRTLSDVSHISNISLNGINETACSSALNSRLDPPPDDLENLDISSFQAPDDLLDG
CRIYLCGFSGKKLDKMRRLINSGGGVRFNQLNEDVTHVIVGEYNDELKQFLNKTTHRPHA
VTAKWLLECFGKGYLLPVEQYIPLNYQPIENPVLEQPGIKRTVPKSNSLTKKEAVKLVQH
QKADEDDLLSQYVNNDSTLIEVEKLETGNFSDATHVTIQEEKQSSICHSSLTETSTVVEE
GLFSRKRFLLLGFGEEDESCIVEIIKENAGKVLPPQNRAIADYAVVPLLGCKVESTVGDV
VTNTWMIMCVEQQLLLNPQSNPLFTPVSVMEGSTPLEDCVLSFSQFTGAERDSLVFLAGL
LGARVQEFFVRRANPKKGMFASTHLVVKEPDGSKYEAAKKWNLPAVTMAWLLQSARTGKK
ADESKFPVENVNAGDKEESLMSQSNKTETTIMSSDIPDHPSNLLEAGKKIAVTPLDVNRF
QSKAFHSVISHHIGQKPTLPAEGRLIQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAAL
ETPGAPNQRNRKPSTPLSEVIGRNLKLALANSTRHTAALTASPQLRAAQAEVVEDSKPLA
DLVICVSKKLSKKQSELNAVAASLGADYRWCFDETVTHFIYQGRQNDSSKEYKSVKERGI
HIVSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVQDGRLSSSRLPSTGKIAKEVES
ISVDENDIGDVTTNQVKEAVTIREEQIAGNEAKGVLTQTLEMRENFQKQLQEIMSATSIV
KPQAQRGSLSRNGFDSSPTTPDGTRSVRNGRSRVLEALRQSRQAVMDINTEPSQNEQIVW
DDPTAREERARLVSNLQWPNSPSQYSEQIQTDVNNMNDSPFRESFTDREVAELAVHDSED
TGVAEVPKHPIYNEPETPGKDDQVIPTPQAPSIAFPLANPPVAPQPKAKAITVDEKVDEE
PEKPRKFQLSSLNPQERIDYCHLIEELGGLVLEKQCFDPSCTHIIVGHPLRNEKYLASMA
AGKWVLHRSYLEACRAACCFVQEEDYEWGSNSILNVLSGINVNQKKLALAAMRWRKKIHK
RRQETGIIEGAFSGWKVILNVDQTKEAGFKRLLQSGGAKVLPGHSLLLYKEATHLFADFS
KLKPDDARVNVLEAAAQGVNCLKPEYIADYLIQELPPPMEGYCLPEAVSYLQNSKELGIG
LSQKRKAPGETSKVKRSRIH
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtgacaaggaaccattttttgttaaatttataaagtcttctggaaacacagaa
tatttttttaaagctcttgagtccataaaagaatttcagtcagaagaatatctccagatc
cttgaagaagtgccagcactcaatataaaagagaatgacaaatccctttacatctgtgac
ccttttagtggcattgtttttagtcacctcaaaaagcttggctgtaggatcgttggacca
caggtagtcatattttgtatgcagcaccagcgatgtgtcccgagagccgaataccctgtt
cataatatggccatggctgatataacaatatcctgtactagtcttgaaaaagaaactagg
gaagaagttcataagtatgtacagatgatgggtggccgtgtgtacagagatctcaatgca
tcagtaactcatcttatagctggagaagttggcagcaagaaatatttagtggctgctgct
ctgaagaaacccatattgcttcctacttggataaaagcattgtgggagaagtcccaacaa
ggtatgattagatacacagatataagcatggaagacttcatttgtcctttgtttcgtggc
tgtacaatctgtgtaactggcttaagcagtgtggacaggaaggaggtgcagcgtctcact
actgagcatggtggtcaatacacagggcagctcaagatgaatgagtgcacccacctcatt
gttcaagagccaaaaggtcagaaatatgaatgtgccaaaaaatggaatgtgcagtgtgtg
tccatccagtggttttttgacagtatcgagaatggcttctgccaggatgaggcaatgtat
aagacagagtctgtacaaaagcaaaataccacacccagtacatcaactcctactagccaa
gctagcaaacctgacagtcgtaccctttcagatgtcagccacatttccaatatcagtttg
aatggcattaatgaaactgcatgtagctctgctttgaacagcaggctggatcctcctcct
gatgatctggaaaatttggatatcagttcttttcaagcccctgatgatttactagatggg
tgtcgaatttatctctgtggcttcagtggcaagaagttagataaaatgagaaggcttatt
aactctggtggtggtgttcgatttaatcagctcaatgaagatgtcacccatgttattgtg
ggagaatataatgatgaactgaagcagtttttgaacaagactactcacaggcctcatgca
gtgacagcaaaatggttgctggagtgctttggtaagggttacttacttccagtggagcag
tatatccctctgaattaccagccaatagaaaatccagttttggagcaacctggaattaaa
cgaactgttcccaaaagtaatagtctcacaaaaaaagaagctgtaaagcttgtacagcac
cagaaagcagatgaagatgacctcctctctcaatatgtgaataatgattccacattaatt
gaagttgaaaagctagaaactggtaacttcagtgatgctacgcatgttaccattcaagaa
gagaagcagtcctctatctgtcatagttcactgactgagacttctacagtggttgaagaa
ggcttattcagcagaaagaggttccttcttttgggttttggtgaagaggatgagtcctgc
attgtagaaattataaaggagaatgctgggaaagttctaccgcctcaaaacagagcaatt
gcagactatgctgtggttcctttactgggatgcaaggtggagtcaactgtaggagatgtt
gttacaaacacatggatgattatgtgtgtagaacagcagctccttttaaaccctcagtcc
aacccacttttcaccccagtatcagtaatggaaggaagcactcctctggaagactgtgta
ctgtctttcagccagtttactggtgccgagagagactccctggtgttcttggcaggtctt
cttggagcgagagtccaggaattctttgtgcgaagagccaacccaaagaaaggaatgttt
gccagcacccacctagtagtcaaagagccagatggttctaagtatgaagcagcaaagaaa
tggaatttacctgcagtcactatggcttggctcttgcagtctgcaaggacaggaaagaaa
gcagatgaaagcaagttcccagttgaaaatgttaatgctggagataaagaagagagttta
atgagtcagtccaacaagacagagacaactataatgtcttcagatataccagaccatcct
agcaatctccttgaagctgggaagaaaatagctgtgacgcctcttgatgtgaaccggttc
cagagtaaagctttccatagtgtgatctcgcaccatattgggcaaaagccaacccttcct
gcagaaggaagactgatccagaaagaaccatctttgcatcttgacacaccatccaaattt
ctttccaaagataagctcttcaagccttcattcgatgtaaaggatgccctggcagctttg
gaaactccaggggctcccaatcagagaaacaggaagccgagtactcctctttctgaagtc
attggcaggaacttgaaattagctctggcaaacagcactcgtcatacagcagctcttact
gccagccctcagctgcgggctgcacaagcagaagtggtggaagattcaaaacctcttgct
gatctagtcatatgtgttagtaagaaactcagtaaaaagcaaagtgaactgaatgctgtt
gccgcttctcttggagcagattacagatggtgctttgatgaaacagtaactcatttcatc
taccagggaagacaaaatgacagcagtaaggaatacaaatctgttaaagaaaggggcata
cacattgtttcagagcattggcttttagagagtgcacaagaatataaacgacttcctgaa
tctctgttccctcacacttacaatcccaaaatgagtctggatatcagtgcagtgcaagat
ggcagactttcttccagtagacttccatcaactggaaaaatagcaaaggaagttgagagt
atttcagtggatgaaaatgacataggagatgtaactactaaccaggtaaaggaagcagtc
acaataagggaggagcaaattgcaggaaatgaagccaaaggagttttaacccagacactg
gaaatgagggagaactttcaaaagcaactacaggagatcatgtctgcaacatcaatagtg
aaaccacaagcacaaagaggatcgttgtcaaggaatggttttgacagttcccctaccaca
ccagatggcacacgatctgtgcgtaacggtcgtagtagagtcttggaagctctaaggcag
tcacggcaagcagtgatggacataaacacagagccatcacaaaatgagcagattgtctgg
gatgaccccactgcaagagaggagagagcaaggctcgtcagcaacttacagtggcccaat
agtccttcacagtactcagaacaaattcagactgatgtaaataacatgaatgattcccct
ttcagggaatccttcactgacagagaagttgctgaattagctgttcatgattctgaggac
acaggtgtggcagaggtaccaaagcatccaatatataatgaaccagaaaccccaggaaaa
gatgatcaagtgatccccacaccgcaagctcccagcattgctttcccgctggccaaccct
cctgtggctccacagcccaaagcaaaggctattacagtagatgagaaggttgatgaagaa
ccagaaaaaccgcgcaaattccagctgtcttcacttaatcctcaagagcgaatcgattac
tgccatctgattgaggaactaggtggactggtgcttgagaagcagtgctttgatccaagt
tgtacacacatcattgtgggacatcctcttcgaaatgagaaatacttggcctcgatggct
gctggaaagtgggtgcttcatcgttcctacctggaggcatgcagagcagcctgctgcttt
gtacaggaggaagattatgaatggggaagtaactccatactcaatgttttgtctggaatc
aatgtaaaccaaaagaaactagcacttgcagcaatgagatggaggaaaaaaatccataaa
aggaggcaggaaactggcatcattgagggggcatttagtggctggaaagtgattttgaat
gttgaccaaaccaaggaagcaggattcaaacgtcttcttcaatcaggaggagcaaaggta
ctgccaggtcattctctacttctctataaagaagctactcacctttttgctgacttcagt
aaactgaagccagatgatgccagagtcaatgtactggaggctgctgcccaaggagtgaac
tgcttgaaaccagaatatattgctgactacctcatacaggagcttcctcctcccatggag
ggttactgtctgccagaagctgtttcttatcttcaaaatagcaaagaactgggaattgga
ttatctcagaagagaaaagcacctggagaaacaagcaaagtcaaacgatccagaatacac
tga
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integrated database retrieval system
