Chelonia mydas (green sea turtle): 102942378
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Entry
102942378 CDS
T02989
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03030
DNA replication
cmy03420
Nucleotide excision repair
cmy03430
Mismatch repair
cmy03440
Homologous recombination
cmy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102942378 (RPA1)
03420 Nucleotide excision repair
102942378 (RPA1)
03430 Mismatch repair
102942378 (RPA1)
03440 Homologous recombination
102942378 (RPA1)
03460 Fanconi anemia pathway
102942378 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmy03000
]
102942378 (RPA1)
03032 DNA replication proteins [BR:
cmy03032
]
102942378 (RPA1)
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102942378 (RPA1)
Transcription factors [BR:
cmy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102942378 (RPA1)
DNA replication proteins [BR:
cmy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102942378 (RPA1)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102942378 (RPA1)
MMR (mismatch excision repair)
102942378 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
102942378 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
102942378
NCBI-ProteinID:
XP_037736729
LinkDB
All DBs
Position
17:630860..674257
Genome browser
AA seq
616 aa
AA seq
DB search
MSARLSEGAIAAIMQGENNLKPVLQVINIRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLIEEERLSAHCICQVNRYIVNSLKDGRRVIILMDLDVLKTADVVGANIGNPVPYNEG
QGHQQQRSSAPAASPAHSKPQQQNGNSAVGPTTTKYHGPSKQFGKAGGTSFLSTPGGSQS
KVVPIASLNPYQSKWTICARVTQKGQVRTWSNSRGEGKLFSMELVDESGEIRATAFNDQV
DKFFPLIELNKVYYFTKGHLKTANKQYTAVKNDYEITFHNETSVVPCEDAQHLPSVQFEF
VPISDLENTCKDSIIDIIGVCKSYEDSTKITVKSTNREVSKRNVHLMDTSGKMVTATLWG
DEAERFDGSRQPVVAIKGARVSDFGGRSLSVLASSTVVVNPDSPEAFKLRGWFDSEGQLL
ECTSISDLRGGPTIGGNTNWKTLHEAKSENLGQGDKADYFSCVGTVVFLRKENCMYQACP
SQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADCQENQWVTCFQESAEVILGQ
NAAFLGELKEKNEQAFEEVFQNANFSSYEFRIRVKLETYNDESRIKATVLDVKPVNHKEY
SKRLIMNIRKNAVQLG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcggctgagcgagggggccatcgcggccataatgcagggagagaataattta
aagcctgtcctccaagtcattaacatccgtgccatagccacaggaaatgggccacctcgt
taccgtgtgctgatgagcgatggggtgaacacactttcctctttcatgttggctacacag
ctgaactctctaattgaagaggagcgcttgtctgcccactgtatctgccaggttaacaga
tacattgttaacagcctgaaagatggaaggagagtgattatattgatggatttagatgtt
ctgaaaacagctgatgtggttggtgcaaatattggcaatccagtaccatacaatgaagga
caggggcaccagcagcaacgttcctcagctccagcagccagcccagcacacagcaaacca
cagcagcagaatggaaattcagcagtaggccccactactactaagtaccatggcccctca
aagcagtttggtaaagcaggtggtactagcttcttgagcacccctggtggatcacagtcc
aaagtggtaccaattgccagtctgaacccataccaatccaaatggaccatttgtgctcgt
gttacccagaaaggccaggttcgcacatggagcaactcccgtggtgaaggaaagctgttc
tctatggagctggttgatgaaagtggtgaaatcagagctactgctttcaatgatcaagtg
gacaagttctttcccctcattgaattgaacaaggtgtattacttcaccaaaggccatctg
aagacagctaacaagcagtacacagctgtgaaaaatgactatgagatcacattccataat
gagacttctgttgtaccctgtgaggatgctcagcaccttccttcagttcagttcgagttt
gtgcccatctctgacttggagaacacatgcaaagactcaattatcgacataattggagtc
tgtaagagctatgaggacagcactaaaattacagtgaaatctaccaatagagaggtgtcc
aagaggaatgtgcatttgatggatacatcggggaagatggtgacagctactctttgggga
gatgaggctgaaagatttgatggttctagacaacctgtggtagccatcaaaggagccaga
gtctctgattttggtggccggagtctctctgtcctggcctcgagcacagtcgtggtgaac
ccagatagtccagaagcatttaagctccgaggatggtttgactctgaagggcagcttttg
gaatgtacctcaatctctgatctgagaggtggaccaacaattgggggaaataccaactgg
aaaactttgcatgaagctaaatctgaaaatttgggacaaggagataaggcagattatttt
agctgcgtgggcacagtggtattcctgcgcaaagagaattgcatgtaccaggcatgtccc
tctcaggactgcaataaaaaagtgatagaccaacaaaatggactgtatcgctgtgagaaa
tgcgatcgcgagttccccaacttcaagtatcgcatgatactctcggtgaacattgcagac
tgtcaggagaatcagtgggtgacttgttttcaggagtcagcagaggtcattcttggacaa
aatgctgctttcctgggagaactgaaagaaaagaatgagcaggcatttgaggaagtgttc
caaaatgccaacttcagctcatacgagttcaggatcagagtcaagttggagacttacaat
gatgaatctcgtattaaggctacagtactggatgtgaagcctgtgaaccacaaagaatac
agcaagaggctgatcatgaacatcagaaaaaacgcagtacagctaggttga
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