Chelonia mydas (green sea turtle): 102942604
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Entry
102942604 CDS
T02989
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04382
Cornified envelope formation
cmy04510
Focal adhesion
cmy04512
ECM-receptor interaction
cmy04518
Integrin signaling
cmy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102942604 (COL4A6)
04518 Integrin signaling
102942604 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102942604 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102942604 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102942604 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmy04147
]
102942604 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102942604 (COL4A6)
Exosome [BR:
cmy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102942604 (COL4A6)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102942604 (COL4A6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102942604
NCBI-ProteinID:
XP_007060206
LinkDB
All DBs
Position
9
Genome browser
AA seq
1684 aa
AA seq
DB search
MHTGLVVLVAFCLAVELVTGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGSIGNQGPI
GVPGFAGPEGLAGPKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPGQPGPRGFR
GLDGCNGSIGSPGVSGLDGFPGTQGPPGRFGPKGPKGEPAYAQGGLKGSKGENGLPGLDG
ISGPKGFPGPAGSVGPIGLPGLQGPPGAMGPPGPKGNMGLGFQGEKGAKGDVGLPGPAGP
PPSTGILEFMGFPKGKPGAKGEPGPKGFPGIGGLPGPMGFGGIGEKGEKGIPGLPGGRGF
LGLDGSDGFPGRKGQFGLPGFPGLDGVQGMKGELGEMGPPGPLISLDREDGLISGLPGDP
GIPGTPGPRGDEGIVGLPGLPGTRGLSALDRGAPGLMGFPGIPGITGEPGDQGRATVGLP
GTPGIGGLPGMPGPPGLPGPAQILNGEPGEPGRPGQRGPPGVLGLKGTKGDPGDCACDGG
VTGAGPKGAPGPLGPPGSPGEPGFKGSSGDPGSVGAQGLRGPPASPGQPGSPGRKGEKGD
PSFARGRGLHGDPGATGARGPSGIPGTPGRDGFPGLPGQPGPPGDVGLGFPGEKGLPGLP
GSKGRRGESGLPGIGFPGPSGVRGPPGDPGMDGFPGQPGLPGPPGITLPCVVPGGFGAPG
PPGIPGRPGPKGRPGFPGIPGQPGLRGSKGQPGIPGSMALPGAPGFPGPRGDQGPQGLPG
LDGTDGFPGKMGTPGLSGAKGAPGEVFGAERGALGERGRPGFPGDKGLVGEPGFPGQKGV
DGRPGLPGFKGERGNPGLRGIDGLRGPPGPGGPFGIKGEPGPRGAVGFSGSPGLRGVKGP
TGDAGPPGPAGMKGFPGLEGFPGPPGDRGFPGSPGPLGRDGRPGFFGAKGEKGPPGLIGF
PGMPGLPGIPGVSGLKGIPGSAGREGNIGYSGPSGLKGDRGDRGLPGLPVLRPPELALAF
KGDKGDRGSAGLRGFPGPRGDKGFPGPRGQPGLPGPRGSPTTDRGLPGDAGFPGLPGPPG
LPGQKGQAGIIGLPGFPGESGSEGISGAPGFPGTVGFPGPKGDPGESLGISGGLGDKGER
GDRGFPGERGKDGPKGEPGYPGSTGLDGPKGVPGDLGQEGPPGLPGIAGLRGNAGLPGSP
GQPGPVGFIGLPGIAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEAGLNGPAGLPGPKG
EEGSPGIGLGAPGLPGQKGSSGDMGPPGTLGLPGLPGPPGISLPSNIPGRRGDPGRPGVD
GNPGPPGPPGPRGLSGPASNQGDTGLPGLPGVPGLPGIKGDVGLPGPTGIPGASGLKGVK
AEPGFMGMPGKDGLPGDPGIPGLKGETGRRGFPGLPGAPGLVPKPEEVIVPPGLLGLPGI
DGVPGYAGDRGFQGPDGQQGPKGLSGRSGQVGRPGLPGPDGTVGDPGTPGIPGPPGLEGV
SGKPGLFGLPGMPGRSVGVGYTLVKHSQSEQIPPCPIGMNKLWEGYSLLYVEGQEKAHNQ
DLGFAGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTAPIPMMPVSRLEIPQYISH
CSVCEAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLED
FRATPFIECNGARGTCHYFANKYSFWLTTVERTQQFVSAPPSETLKAGQLRTRVSRCQVC
MKNL
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagggcttgttgttctggttgctttctgcctagctgtggaactggtgactggg
ggtgggaagaaatcctataacggaccatgtgggggtcgagattgcagcgcgggctgcaaa
tgttttccagaaaaaggtgctcggggtcgaccgggatctattgggaaccaaggacctata
ggtgttccaggatttgctgggccagaaggtttggcagggccaaaaggtgagagaggggca
gtgggctctccaggatcagctggactgaaaggagataagggtccaatgggagtgcctgga
tttcaaggcatcaatgggattccgggccaccctggccagccagggcccagaggttttcgt
ggccttgatggctgcaatggttctattgggagtcctggtgtttccgggttggatgggttt
cctggtacacaggggccacctggtcgctttggtcccaaaggtcccaaaggagaacctgcg
tatgcccaaggtggccttaaaggaagtaagggtgaaaatggtcttcctggattggatggg
atttctggtccaaaaggtttccctggcccagcaggttctgtgggtcctataggattgcca
ggtttgcaggggccaccgggtgcaatggggccaccaggaccaaaaggtaacatgggatta
ggtttccaaggagagaaaggtgcaaagggagatgtcgggctacctggccctgcaggtccc
ccaccatccactgggatactagagttcatgggatttccaaaagggaaaccaggagcaaag
ggtgagccaggccctaaaggattccctgggattggaggattacctggccctatgggcttt
gggggtatcggagaaaaaggagaaaaggggatccctggcttaccaggtggcaggggattt
ctgggattggatggatctgatgggtttccagggagaaagggtcagtttggtcttcctggt
tttcctgggctggatggagtgcaaggaatgaagggtgaattaggtgaaatgggtcctcca
ggccctcttatttctctcgatagagaagatggactcatctcaggtttgccaggagatccc
gggattccagggactccaggccctcgaggagatgaagggattgttggtttaccaggcctt
cctggcacccgaggtctctcagctcttgatcgaggggcaccaggtctcatgggatttcca
ggtattccaggtattactggtgaaccaggagaccaagggagagcaacagttggattacca
ggcactccaggcataggtggtttaccgggtatgccaggacctccaggactgcctggtcca
gcacaaatcctcaatggagaacctggagaaccaggaagacctggacaacgggggccacca
ggagttttgggactaaaagggaccaaaggggatccaggtgattgtgcttgtgatggagga
gtcacaggagctggaccaaaaggtgcaccaggccctctgggtccaccaggaagccctggt
gaacctgggtttaagggttctagtggagatcctggcagtgtgggtgcacaagggctgcga
gggcctccggcttcacctggtcaaccaggttctccaggccgtaagggagaaaaaggagat
ccatcttttgcaagaggcagaggtctccatggggatcctggtgcaacaggagccagaggg
ccttctggcatcccaggaactcctggcagagatggattcccaggtttaccaggccagcca
ggtcctccgggtgatgttggactaggctttccaggcgaaaaaggcctgccaggattacct
ggctccaagggccggcgtggggagagcggtcttcctggcattggtttcccaggtcctagt
ggagttcgcggccctccaggtgacccaggaatggatggttttccaggacaaccaggtctt
ccaggtcctccagggatcaccttgccctgtgtagttcctggagggtttggtgcccctggg
cctccaggcataccaggacgtccaggtcccaagggcagaccggggtttccaggcattcca
ggtcaacctggattacgtggatcaaaaggacaaccaggtattccaggatcaatggcattg
ccaggagcaccaggctttcctgggcctcgtggagatcagggaccacaagggcttccagga
cttgatggaacagatggtttccctggaaagatgggaactcctggcttgtcaggggcaaaa
ggagctcctggtgaagtgtttggtgctgaaagaggagccctgggtgagcgtggcagacct
ggattcccaggagataaaggacttgttggagaacctggatttcctggacagaagggtgtt
gatggaaggcctggcttaccgggttttaaaggcgaacggggtaatccagggctccgaggt
attgatggattgcgaggacctcctggtcctggaggtccgtttggcattaaaggagaacca
ggtcccaggggagcagttggcttctcaggatcaccaggacttcgtggagtcaaaggacca
actggtgatgcaggtccaccaggccctgctggtatgaaaggcttcccaggtctagaaggt
tttccaggaccacctggggacagaggattcccagggtcacctgggcctttgggtagagat
ggacgtccaggtttctttggagcaaaaggtgaaaagggtcctcccgggttgattggcttt
cctggcatgccaggcctgcctggtatccctggggtgagtgggctgaaaggaattcctggg
tcagctggaagggaaggaaatattggatattctggaccctctggtctaaaaggtgacagg
ggtgatcgaggtctgcctggactcccggttcttaggcccccagaattggccttggcattc
aagggagacaaaggtgatcgtgggtcagctggactgagaggattccctggacctagaggt
gataaaggattccctggaccccgtggacaacctggtcttcctggtccacgaggatcgcca
accacagatagaggactacctggtgatgcagggttcccaggcctgcctggaccacccggc
ttgccaggacagaaaggacaggctggaatcataggattacccggatttccaggagaaagt
ggttcagagggtatctcaggagcaccagggttcccaggaactgttggtttccccggtcca
aagggtgacccaggggaatcacttggaatttctggtgggttaggagataaaggagaacga
ggggaccgtggattcccaggtgagagggggaaagatgggccaaagggtgaaccaggatac
ccaggaagcactggcctggatgggcctaaaggtgtcccaggtgaccttggccaagaagga
ccaccaggcctccctggaattgctgggttgcgaggaaatgcaggtctcccgggttctcca
gggcagcctggacctgtaggattcatcggactccctgggatagcagggccaaaaggattc
cctggatttcctggtttaaatggtctgaacggcttaccaggcacaaaagggtcacctgga
acaccaggtctgagtgaagctggactgaatggccctgcagggcttccaggtcctaagggt
gaagaaggttccccaggcattggcctaggagccccaggactccctgggcagaaaggatca
tcaggagacatgggtcctccaggtaccttgggtctgcctggtttaccaggacctcctggc
atctctcttccttcaaatatacctgggagacgtggtgatcctggccgtcctggagtggat
gggaatccaggccccccaggtcctccaggtcctcgagggctctccggcccagcctccaat
caaggtgataccggccttccaggtttacctggagttcctggtttgccaggcataaagggt
gacgtaggactccctggtccaactggaattccaggagcttcgggactcaaaggtgtgaag
gctgagccaggctttatggggatgccaggtaaagatgggcttccaggggaccctggaatt
cctgggctgaaaggtgaaactggccgtcgaggtttcccgggcctaccaggcgctccaggc
ctagtaccaaaaccagaagaagtcatagttcctccagggctacttggtctgccaggaatt
gatggggtccctggctatgctggagatcgtggatttcagggaccagatgggcagcaaggt
ccaaaaggtctgtcaggcagatcaggtcaggtgggccgtcctggtttaccagggccagat
ggcacagttggggatccaggaaccccaggtattccagggccaccaggattggaaggtgtc
tctggaaagccaggcctgtttggtttgcccggaatgccgggtcggagtgtaggcgttgga
tacactttggtgaagcacagccagtcagagcagatcccaccgtgcccaattggaatgaat
aagctctgggagggttacagcttgctgtatgtggaggggcaggaaaaggcgcacaaccag
gatctaggttttgctggctcctgcttgcctcgcttcagcaccatgccatttatttactgc
aacatctatgaggtgtgctactatgccagccgaaatgacaaatcctactggctctccacc
actgctcccatccccatgatgccagtgagccgtctggagatcccacagtacatcagtcat
tgctcagtgtgtgaagcaccttcccaggctattgcagtacatagccaggacattaccatc
ccgcagtgccccgagggctggcgcagcctgtggatcggatactcttttctaatgcacact
gcagctggcgcggaaggcggaggtcagtcccttgtctcacccggctcttgcctcgaggat
ttccgtgctactcctttcattgaatgcaatggtgccagaggaacctgccattactttgca
aacaaatacagcttctggctgaccacagtcgaacgcacgcagcagtttgtcagtgctcct
ccctcagaaactctgaaagcaggacagctccgaacacgagtcagccgttgccaagtgtgc
atgaagaacttgtag
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