Chelonia mydas (green sea turtle): 102942604
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Entry
102942604 CDS
T02989
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04510
Focal adhesion
cmy04512
ECM-receptor interaction
cmy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102942604 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102942604 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102942604 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmy04147
]
102942604 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102942604 (COL4A6)
Exosome [BR:
cmy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102942604 (COL4A6)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102942604 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102942604
NCBI-ProteinID:
XP_007060206
LinkDB
All DBs
Position
9:83884699..84070637
Genome browser
AA seq
1684 aa
AA seq
DB search
MHTGLVVLVAFCLAVELVTGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGSIGNQGPI
GVPGFAGPEGLAGPKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPGQPGPRGFR
GLDGCNGSIGSPGVSGLDGFPGTQGPPGRFGPKGPKGEPAYAQGGLKGSKGENGLPGLDG
ISGPKGFPGPAGSVGPIGLPGLQGPPGAMGPPGPKGNMGLGFQGEKGAKGDVGLPGPAGP
PPSTGILEFMGFPKGKPGAKGEPGPKGFPGIGGLPGPMGFGGIGEKGEKGIPGLPGGRGF
LGLDGSDGFPGRKGQFGLPGFPGLDGVQGMKGELGEMGPPGPLISLDREDGLISGLPGDP
GIPGTPGPRGDEGIVGLPGLPGTRGLSALDRGAPGLMGFPGIPGITGEPGDQGRATVGLP
GTPGIGGLPGMPGPPGLPGPAQILNGEPGEPGRPGQRGPPGVLGLKGTKGDPGDCACDGG
VTGAGPKGAPGPLGPPGSPGEPGFKGSSGDPGSVGAQGLRGPPASPGQPGSPGRKGEKGD
PSFARGRGLHGDPGATGARGPSGIPGTPGRDGFPGLPGQPGPPGDVGLGFPGEKGLPGLP
GSKGRRGESGLPGIGFPGPSGVRGPPGDPGMDGFPGQPGLPGPPGITLPCVVPGGFGAPG
PPGIPGRPGPKGRPGFPGIPGQPGLRGSKGQPGIPGSMALPGAPGFPGPRGDQGPQGLPG
LDGTDGFPGKMGTPGLSGAKGAPGEVFGAERGALGERGRPGFPGDKGLVGEPGFPGQKGV
DGRPGLPGFKGERGNPGLRGIDGLRGPPGPGGPFGIKGEPGPRGAVGFSGSPGLRGVKGP
TGDAGPPGPAGMKGFPGLEGFPGPPGDRGFPGSPGPLGRDGRPGFFGAKGEKGPPGLIGF
PGMPGLPGIPGVSGLKGIPGSAGREGNIGYSGPSGLKGDRGDRGLPGLPVLRPPELALAF
KGDKGDRGSAGLRGFPGPRGDKGFPGPRGQPGLPGPRGSPTTDRGLPGDAGFPGLPGPPG
LPGQKGQAGIIGLPGFPGESGSEGISGAPGFPGTVGFPGPKGDPGESLGISGGLGDKGER
GDRGFPGERGKDGPKGEPGYPGSTGLDGPKGVPGDLGQEGPPGLPGIAGLRGNAGLPGSP
GQPGPVGFIGLPGIAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEAGLNGPAGLPGPKG
EEGSPGIGLGAPGLPGQKGSSGDMGPPGTLGLPGLPGPPGISLPSNIPGRRGDPGRPGVD
GNPGPPGPPGPRGLSGPASNQGDTGLPGLPGVPGLPGIKGDVGLPGPTGIPGASGLKGVK
AEPGFMGMPGKDGLPGDPGIPGLKGETGRRGFPGLPGAPGLVPKPEEVIVPPGLLGLPGI
DGVPGYAGDRGFQGPDGQQGPKGLSGRSGQVGRPGLPGPDGTVGDPGTPGIPGPPGLEGV
SGKPGLFGLPGMPGRSVGVGYTLVKHSQSEQIPPCPIGMNKLWEGYSLLYVEGQEKAHNQ
DLGFAGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTAPIPMMPVSRLEIPQYISH
CSVCEAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLED
FRATPFIECNGARGTCHYFANKYSFWLTTVERTQQFVSAPPSETLKAGQLRTRVSRCQVC
MKNL
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagggcttgttgttctggttgctttctgcctagctgtggaactggtgactggg
ggtgggaagaaatcctataacggaccatgtgggggtcgagattgcagcgcgggctgcaaa
tgttttccagaaaaaggtgctcggggtcgaccgggatctattgggaaccaaggacctata
ggtgttccaggatttgctgggccagaaggtttggcagggccaaaaggtgagagaggggca
gtgggctctccaggatcagctggactgaaaggagataagggtccaatgggagtgcctgga
tttcaaggcatcaatgggattccgggccaccctggccagccagggcccagaggttttcgt
ggccttgatggctgcaatggttctattgggagtcctggtgtttccgggttggatgggttt
cctggtacacaggggccacctggtcgctttggtcccaaaggtcccaaaggagaacctgcg
tatgcccaaggtggccttaaaggaagtaagggtgaaaatggtcttcctggattggatggg
atttctggtccaaaaggtttccctggcccagcaggttctgtgggtcctataggattgcca
ggtttgcaggggccaccgggtgcaatggggccaccaggaccaaaaggtaacatgggatta
ggtttccaaggagagaaaggtgcaaagggagatgtcgggctacctggccctgcaggtccc
ccaccatccactgggatactagagttcatgggatttccaaaagggaaaccaggagcaaag
ggtgagccaggccctaaaggattccctgggattggaggattacctggccctatgggcttt
gggggtatcggagaaaaaggagaaaaggggatccctggcttaccaggtggcaggggattt
ctgggattggatggatctgatgggtttccagggagaaagggtcagtttggtcttcctggt
tttcctgggctggatggagtgcaaggaatgaagggtgaattaggtgaaatgggtcctcca
ggccctcttatttctctcgatagagaagatggactcatctcaggtttgccaggagatccc
gggattccagggactccaggccctcgaggagatgaagggattgttggtttaccaggcctt
cctggcacccgaggtctctcagctcttgatcgaggggcaccaggtctcatgggatttcca
ggtattccaggtattactggtgaaccaggagaccaagggagagcaacagttggattacca
ggcactccaggcataggtggtttaccgggtatgccaggacctccaggactgcctggtcca
gcacaaatcctcaatggagaacctggagaaccaggaagacctggacaacgggggccacca
ggagttttgggactaaaagggaccaaaggggatccaggtgattgtgcttgtgatggagga
gtcacaggagctggaccaaaaggtgcaccaggccctctgggtccaccaggaagccctggt
gaacctgggtttaagggttctagtggagatcctggcagtgtgggtgcacaagggctgcga
gggcctccggcttcacctggtcaaccaggttctccaggccgtaagggagaaaaaggagat
ccatcttttgcaagaggcagaggtctccatggggatcctggtgcaacaggagccagaggg
ccttctggcatcccaggaactcctggcagagatggattcccaggtttaccaggccagcca
ggtcctccgggtgatgttggactaggctttccaggcgaaaaaggcctgccaggattacct
ggctccaagggccggcgtggggagagcggtcttcctggcattggtttcccaggtcctagt
ggagttcgcggccctccaggtgacccaggaatggatggttttccaggacaaccaggtctt
ccaggtcctccagggatcaccttgccctgtgtagttcctggagggtttggtgcccctggg
cctccaggcataccaggacgtccaggtcccaagggcagaccggggtttccaggcattcca
ggtcaacctggattacgtggatcaaaaggacaaccaggtattccaggatcaatggcattg
ccaggagcaccaggctttcctgggcctcgtggagatcagggaccacaagggcttccagga
cttgatggaacagatggtttccctggaaagatgggaactcctggcttgtcaggggcaaaa
ggagctcctggtgaagtgtttggtgctgaaagaggagccctgggtgagcgtggcagacct
ggattcccaggagataaaggacttgttggagaacctggatttcctggacagaagggtgtt
gatggaaggcctggcttaccgggttttaaaggcgaacggggtaatccagggctccgaggt
attgatggattgcgaggacctcctggtcctggaggtccgtttggcattaaaggagaacca
ggtcccaggggagcagttggcttctcaggatcaccaggacttcgtggagtcaaaggacca
actggtgatgcaggtccaccaggccctgctggtatgaaaggcttcccaggtctagaaggt
tttccaggaccacctggggacagaggattcccagggtcacctgggcctttgggtagagat
ggacgtccaggtttctttggagcaaaaggtgaaaagggtcctcccgggttgattggcttt
cctggcatgccaggcctgcctggtatccctggggtgagtgggctgaaaggaattcctggg
tcagctggaagggaaggaaatattggatattctggaccctctggtctaaaaggtgacagg
ggtgatcgaggtctgcctggactcccggttcttaggcccccagaattggccttggcattc
aagggagacaaaggtgatcgtgggtcagctggactgagaggattccctggacctagaggt
gataaaggattccctggaccccgtggacaacctggtcttcctggtccacgaggatcgcca
accacagatagaggactacctggtgatgcagggttcccaggcctgcctggaccacccggc
ttgccaggacagaaaggacaggctggaatcataggattacccggatttccaggagaaagt
ggttcagagggtatctcaggagcaccagggttcccaggaactgttggtttccccggtcca
aagggtgacccaggggaatcacttggaatttctggtgggttaggagataaaggagaacga
ggggaccgtggattcccaggtgagagggggaaagatgggccaaagggtgaaccaggatac
ccaggaagcactggcctggatgggcctaaaggtgtcccaggtgaccttggccaagaagga
ccaccaggcctccctggaattgctgggttgcgaggaaatgcaggtctcccgggttctcca
gggcagcctggacctgtaggattcatcggactccctgggatagcagggccaaaaggattc
cctggatttcctggtttaaatggtctgaacggcttaccaggcacaaaagggtcacctgga
acaccaggtctgagtgaagctggactgaatggccctgcagggcttccaggtcctaagggt
gaagaaggttccccaggcattggcctaggagccccaggactccctgggcagaaaggatca
tcaggagacatgggtcctccaggtaccttgggtctgcctggtttaccaggacctcctggc
atctctcttccttcaaatatacctgggagacgtggtgatcctggccgtcctggagtggat
gggaatccaggccccccaggtcctccaggtcctcgagggctctccggcccagcctccaat
caaggtgataccggccttccaggtttacctggagttcctggtttgccaggcataaagggt
gacgtaggactccctggtccaactggaattccaggagcttcgggactcaaaggtgtgaag
gctgagccaggctttatggggatgccaggtaaagatgggcttccaggggaccctggaatt
cctgggctgaaaggtgaaactggccgtcgaggtttcccgggcctaccaggcgctccaggc
ctagtaccaaaaccagaagaagtcatagttcctccagggctacttggtctgccaggaatt
gatggggtccctggctatgctggagatcgtggatttcagggaccagatgggcagcaaggt
ccaaaaggtctgtcaggcagatcaggtcaggtgggccgtcctggtttaccagggccagat
ggcacagttggggatccaggaaccccaggtattccagggccaccaggattggaaggtgtc
tctggaaagccaggcctgtttggtttgcccggaatgccgggtcggagtgtaggcgttgga
tacactttggtgaagcacagccagtcagagcagatcccaccgtgcccaattggaatgaat
aagctctgggagggttacagcttgctgtatgtggaggggcaggaaaaggcgcacaaccag
gatctaggttttgctggctcctgcttgcctcgcttcagcaccatgccatttatttactgc
aacatctatgaggtgtgctactatgccagccgaaatgacaaatcctactggctctccacc
actgctcccatccccatgatgccagtgagccgtctggagatcccacagtacatcagtcat
tgctcagtgtgtgaagcaccttcccaggctattgcagtacatagccaggacattaccatc
ccgcagtgccccgagggctggcgcagcctgtggatcggatactcttttctaatgcacact
gcagctggcgcggaaggcggaggtcagtcccttgtctcacccggctcttgcctcgaggat
ttccgtgctactcctttcattgaatgcaatggtgccagaggaacctgccattactttgca
aacaaatacagcttctggctgaccacagtcgaacgcacgcagcagtttgtcagtgctcct
ccctcagaaactctgaaagcaggacagctccgaacacgagtcagccgttgccaagtgtgc
atgaagaacttgtag
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