Chelonia mydas (green sea turtle): 102942829
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Entry
102942829 CDS
T02989
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X3
KO
K06237
collagen type IV alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04382
Cornified envelope formation
cmy04510
Focal adhesion
cmy04512
ECM-receptor interaction
cmy04518
Integrin signaling
cmy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102942829 (COL4A5)
04518 Integrin signaling
102942829 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102942829 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102942829 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102942829 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmy04147
]
102942829 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102942829 (COL4A5)
Exosome [BR:
cmy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102942829 (COL4A5)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102942829 (COL4A5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102942829
NCBI-ProteinID:
XP_027678454
LinkDB
All DBs
Position
9
Genome browser
AA seq
1685 aa
AA seq
DB search
MERRGCRRLAAACLVLLGLWGLSAEAAACHGCTSGSKCDCSGVKGEKGERGFPGLEGQPG
LPGFPGPEGPPGPRGIKGDDGLPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGDPGEIILSSLSGQKGDPGFPGLPG
LPGPPGPLGVQGPIGPPGPPGLTGPPGPTGLPGPKGNMGLNFQGPKGEKGDQGLQGPPGP
PGQIGEQKRPTDIEFQKGDQGIPGERGRPGPPGPQGPPGPSGGVKGEKGEQGEPGKRGKP
GKDGDPGQPGRDGLSGEPGLNGVPGRDGEKGLKGERGLPGPPGVITGNGVEVGPKGNKGL
PGFPGPKGERGYPGLQGPPGLSGAPGIAGVGPPGPPGLPGERGQKGDQGLPGVSIPGQPG
LDGRPGPPGPPGAPGPPGTTIPPSDRVCQRGPPGFPGPSGDKGFMGERGQKGDKGETCFN
CIGTGISGPPGDRGPPGPPGSPGSPGFPGLKGEKGLTGLTGLVGPPGFPGPPGAPGRPGS
KGDPGDSLAFPGLKGDKGDTGFPGPPGLPGIDGSPGREGLPGLPGSKGEPGGVAFKGGMG
PPGDPGVSGLPGDRGPMGPPGFGPQGPTGEKGIQGVSGRPGPPGVPGPKGEPGETITESG
VPGSPGPPGRNGEVGLPGDPGLPGQPGLSGIPGPKGDPGIPGIGLPGPPGLKGFPGMAGP
PGAPGAPGRPGLEGPPGQSGFPGQKGDPGFGVPGPPGPPGPPGFKGVPGLKGDPGFPGNP
GFPGQSGSDGTPGPKGDPGASGPPGLVGPPGFPGIGGQGPPGQPGPPGPVGPPGPPGLQG
VPGEKGDPGPPGFDIPGPPGDRGSPGFPGTPGLIGPPGSPGPPGRDGISGFPGAKGEMGV
MGAPGPQGPPGTPGRNGLPGPKGSDGLPGQPGPSGLAGQKGTKGETGLPGPPGQVDPSQL
GSKGEKGEPGIPGISGVSGQKGYQGLPGDPGPPGFNGQPGAPGLSGPKGEPGLPGQSGPA
GPPGQKGAMGETGLPGIPGIKGFQGIAGRPGQPGPPGFPGLKGEKGNPGLSDIGIPGPKG
DTGFPGYPGNPGSKGTPGNPGLAGLPGNPGAKGEAGLPGFPGTPGIPGPKGIDGPPGNPG
LPGSPGPPGDVGRPGTPGLPGEKGQPGRDGIPGPAGQKGEPGQPGFGRPGPPGLPGLSGQ
KGEMGLPGLPGSPGITGLKGEPGFQGFPGLQGPQGPPGLPGPPMEGLKGSPGPQGVPGRP
GPPGLPGPEGPRGPPGNGGFKGEKGNPGQPGQPGLPGLKGDQGPPGRQGDPGRPGLNGMK
GDPGVPGVPGFPGMKGPIGPPGAIGFKGDQGPSGPPGPPGLPGPSGQTIVVKGDSGPPGP
PGQPGLSGPPGLPGPPGLPGPIGLPGDPGRDGLPGFDGPGGRKGERGLPGQPGFQGTQGP
PGPDGLQGPPGPPGTASVAHGFLITRHSQTTDTPLCPQGTIRIYDGFSLLYVQGNERAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTGQSIQPF
ISRCAVCEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVEISEMFSKPQSETLKAGDLRTRISRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggagcggcggggctgccgccgcctggccgccgcctgcctggtgctgctggggctctgg
gggctgagcgcagaggctgcggcttgccatggatgtacatcaggatccaaatgtgactgt
agtggagtaaaaggcgaaaagggcgagagggggttcccagggttagaaggtcagcccggt
ttacctgggtttccgggaccagagggacctcctggcccaagaggcataaagggtgatgat
ggccttccagggcctactggacccaaaggaatcagaggtcctccaggtctgccaggattt
ccaggaacaccaggacttcccgggttaccagggcaggatgggccaccaggacttcaaggt
atccccggatgcaatggaacaaagggggaacgtggattcccaggcagtccaggttttcca
ggtttacaaggtcctcctggacctcctggcctaccaggtatgaagggcgatccgggtgaa
ataattctgtcatcactgtcaggccagaaaggtgacccaggatttccaggacttccaggg
ttaccaggtccacctggtcccttgggcgtacaaggtcctattggtccccctgggccacca
ggtttaacgggacctcctggtccaacagggcttccagggcctaagggtaatatgggtttg
aacttccaaggacccaagggtgaaaaaggtgaccaagggcttcagggacctccagggcca
ccaggacaaattggggaacagaagagaccaactgacatagagtttcagaaaggagatcag
ggtattccaggagaacgaggtcgaccaggaccccctgggccacaaggtcctcctggtcct
tcgggtggcgtgaaaggtgaaaaaggtgagcaaggagagccaggcaaaagagggaaacct
ggcaaagatggagatcctggtcagcctggtagggatggtttatctggtgagcctggttta
aatggtgttccgggaagagatggtgaaaagggtctgaaaggtgaacgtggtctgcctggt
cctcctggagttatcacaggaaatggtgtagaagtgggaccaaaagggaataaaggactt
ccaggatttccaggacccaaaggcgagcgtggatatcctggcttgcaagggcctcctggc
ttgtcaggagctccagggattgcaggtgtaggcccccctggtccacctggtttgcctggg
gagcgaggacagaagggggatcaaggtctacccggagtttccatacctggacagcctgga
cttgatggacggccagggccacctggaccgccaggtgcccctggacctcccggaacaact
atccctcctagtgacagagtatgtcagcgagggcccccgggttttccaggaccttccgga
gacaaaggttttatgggggagcgaggccagaaaggtgataagggagagacgtgctttaat
tgtataggaactggcatttctgggcctccgggggacaggggaccacccggacctccaggt
agtccaggatctcctggtttcccgggattgaaaggtgaaaaagggctaactggcttaacc
gggctggtaggaccaccaggatttccaggccctccaggtgcccctgggcgtcctggttct
aaaggggaccctggggacagcctggctttcccaggactgaaaggtgacaaaggggacact
ggtttcccaggacctcctggtcttcctggcatagatggctctcctggacgagagggactg
ccaggtcttcctggatccaagggggaacctggtggtgttgctttcaaaggaggaatggga
cctccaggtgatccaggagtgtcaggtcttcctggagacagaggacctatgggacctcct
ggttttggcccacaaggtcctacaggtgaaaaaggcattcaaggtgtatcgggtcgccca
gggcccccaggagttccaggtccgaaaggtgaacctggcgaaactattacagaatcagga
gttccaggctcccctggacctccaggaagaaatggtgaagtaggacttcctggtgatcct
ggtctgccaggtcagcctggcttgtcaggcatcccaggtcctaagggtgatccaggtata
cctggcattggacttccaggcccaccaggcctaaaaggcttcccaggaatggctggcccc
ccaggagcaccaggagcccctggacgaccagggctcgaagggccaccaggacaatctggt
ttcccaggacaaaagggggaccctggatttggtgtcccgggaccacctgggccaccaggg
ccaccgggttttaaaggagttccgggactgaaaggtgatcctggcttcccaggaaaccct
ggttttccagggcagtcaggttctgatggaactcctgggccaaaaggtgaccctggagca
agcggaccacctgggttagtgggacccccagggttcccaggaattggtggtcaaggtcca
cctggacaacctggccctccaggacctgtgggcccaccaggtccaccaggattacaagga
gttccaggtgagaaaggagatcctggccctcctggatttgacatccctggtccacctggt
gacagaggcagtccgggatttccaggaacacccggtctcattgggcctccaggttcacca
ggaccaccaggacgagatggaatatcaggatttccaggtgccaaaggtgagatgggtgtg
atgggagctccaggtccacaaggccctcctggaactcctggcagaaatggccttcctggt
cctaaaggcagtgatggtttaccaggtcagccaggaccttctggactggcagggcagaaa
ggcaccaaaggtgaaacaggtctgccaggtccccctggacaagttgatccaagccagctg
ggatcaaaaggagagaaaggcgagccaggcattccaggtatttctggagtatcaggccag
aaaggttatcaaggtcttccaggtgacccagggccacctggattcaatgggcaaccaggt
gcaccaggattgtcaggccccaagggagagccagggcttcctgggcagtcaggaccagca
ggacctccaggacaaaaaggtgccatgggagagacggggcttccaggtatcccaggtatt
aaaggctttcaaggcatagcaggacgtcctggccagcctggccctccaggatttccagga
ttaaagggggagaaaggcaacccaggtctttcagatattggaatccctggtcctaagggt
gacactggtttccctggatacccaggtaaccctggcagcaaaggtacacctggaaatcct
ggtttggctggattacctggtaatccaggtgcaaaaggagaagcaggccttcctggattc
ccagggacaccaggaattccaggaccaaaaggtattgatggacccccaggtaatcctggt
ctccctggatcacctgggcccccaggtgatgttggccgtcctggcaccccaggtcttcca
ggggagaaaggacagccaggtcgggatggtattcctggaccagctggacagaagggtgaa
ccaggtcagccaggttttgggcgcccaggacctcctggactcccaggattatcagggcaa
aagggcgagatgggattacctggccttccaggatcccctggaattacaggtttgaagggt
gaaccaggtttccagggattccccggtctacaaggtccacaaggtccaccaggcctgcct
gggccacctatggaaggtcttaaaggtagtcctggtccacaaggtgtaccggggagacca
ggtcctccaggtctgccagggccagaaggtccacggggtccccctggaaatggaggattt
aaaggagaaaaaggaaacccaggtcagcctggccagcctggcctccctggtctaaaagga
gatcaaggaccacctggacgccagggtgatcctggtcgtcccggcctgaatggaatgaaa
ggtgatcctggggttccaggtgttccaggatttccaggtatgaagggccccattggacct
ccaggagcaattggttttaaaggtgatcaaggcccatcaggtccaccaggtccaccgggc
ttacctggcccttctggacaaaccattgtagtaaaaggtgactcaggtcctccaggtcca
ccaggccagcctggattgtcaggcccaccaggattgccaggtccaccaggattgccaggt
ccaataggccttccaggggatcctgggcgagatggacttcctggatttgatggtccagga
ggacgtaaaggcgagagaggacttccaggccaaccaggctttcaaggtacgcagggaccc
cctggtcctgatggcttgcaaggcccaccaggtcctcctggaacagcttctgttgctcat
ggattccttataactcgacacagccagactacagacacaccactgtgcccacaaggaaca
ataaggatatacgatggattttctcttctgtacgttcagggaaatgagagagcccatggc
caggacttaggcacagctgggagctgtctccgccgtttcagcaccatgcccttcatgttc
tgtaacatcaacaacgtgtgtaattttgcatcaagaaatgattattcctattggctgtcc
actccgaagccaatgccaatgagcatggagccactgactgggcagagcattcagccattc
attagccgatgtgcagtatgtgaagctcctgccatggttatagctgtccatagtcagacc
attcaaattccgtcatgtccgcaaggctgggactctctttggattggttattctttcatg
atgcacacaagtgctggtgcagagggctctggacaggccttggcatccccaggttcctgt
ttggaagaattccgctctgctccttttattgagtgtcatggtcgtggtacttgtaattac
tatgccaattcatacagtttctggctggcaaccgtagagatatcagaaatgtttagtaaa
cctcagtcagagacactgaaagctggagacctgaggacacgtattagtcgttgtcaagtt
tgtatgaagaggacgtaa
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