Chelonia mydas (green sea turtle): 102943285
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Entry
102943285 CDS
T02989
Symbol
HMBS
Name
(RefSeq) porphobilinogen deaminase isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04140
Autophagy - animal
cmy04148
Efferocytosis
cmy05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102943285 (HMBS)
04148 Efferocytosis
102943285 (HMBS)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102943285 (HMBS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmy04131
]
102943285 (HMBS)
Membrane trafficking [BR:
cmy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102943285 (HMBS)
Hops complex
102943285 (HMBS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
Porphobil_deam
VPS11_N
Porphobil_deamC
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
MGS
Beta-prop_RSE1_2nd
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
102943285
NCBI-ProteinID:
XP_037738211
LinkDB
All DBs
Position
22:19092599..19124102
Genome browser
AA seq
723 aa
AA seq
DB search
MAAYLQWRRFVFFDRETVKEPAGPDGGGAGGAKPFALPPGITVCDSGRGSLVFGDMEGQI
WFLPRSLQLSSFQAYKLRVTHLYQLKQHSILASVGEDEEGINPLVKVWNLEKRDGGNPLC
TRIFPAIPGNKPTVVSCITVHETLNFMAIGFADGSVVLTKGDITRDRHSKTQILHEGNYP
VTGLAFRQSGKITHLFVVTTENIQSYMLSVKDYPRLELDTHGCGLRCSTLSDPSQDLQFI
VAGNECVYLYQPDERGPCFAFEGQKLIVHWYRGYLVIVSKDRKSSPKSEFAGSDPQNSDK
QILNVYDLCNKFIAYSSVFDDVVDVLAEWGSLYVLTRDGKIHALQERDTQTKLEALGLEK
SIAMENKTLRRTQDENGLKNRVIRVGTRKSQLARIQTDSVVEMLRKRYLSLHFEIVAMST
TGDKILDTALSKIGEKSLFTKELENALEKNEVDLVVHSLKDLPTSLPPGFTIGAICKREN
PHDAVVFHPKNYGKTLNSLPEKSVIGTSSLRRAAQLKRRFPQLEFRDIRGNLNTRLKKLD
EKDDFSAIILAAAGLRRMGWENRIGQILNPEDCLYAVGQGALAVEVRARDEEILDMVSAL
HDAETVLCCIAERAFMRHLEGGCSVPVAVSTMLKDSQLYLTGAVYSLDGSDSLKDTMQTG
VNYPQQNQEGPNDDTQYVGITAKKIPRHAQEAAENLGVELASLLLSKGAKRILSVARQLN
DAR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttacctgcagtggcgccgcttcgtgttctttgacagggagacggtgaaggag
ccggccgggcccgacgggggcggagccggcggagcgaagcccttcgcccttccgccgggc
atcaccgtctgcgactcgggcagaggcagcctggtttttggggatatggaaggtcagatc
tggttcttgccacgctctcttcagcttagcagtttccaggcttacaagctgagggtgact
cacctgtaccagctgaagcagcacagcattttggcttctgttggtgaagatgaagaaggc
attaacccgctggttaaagtctggaacttagagaaacgagatggtgggaatcctctttgc
acaaggattttcccagcaataccgggtaacaaacctacagttgtgtcctgcataactgtc
catgagactcttaacttcatggctatcggctttgcagatggaagcgttgtgcttacaaaa
ggggacatcacacgagaccgacacagtaagacccagatcttacatgaaggcaattaccca
gtcactggccttgccttccgccagtctgggaaaatcacccacctttttgttgtcaccacg
gagaacatccagtcctatatgctgtcggtgaaagattatcctcgtctggagctggacacg
catggttgcggtttacgctgctccacgcttagcgacccctcccaggacctccagttcatt
gtggcaggaaacgaatgtgtgtatctgtaccagccagatgagcgtggcccctgctttgcc
tttgagggacagaagttgatcgttcactggtatcggggatacctcgtcatcgtttccaag
gaccggaagagctctccaaaatcagagtttgctgggagcgacccgcagaactccgacaag
caaatcttgaatgtctacgacctgtgtaacaagttcatcgcgtacagctcggtcttcgat
gacgtggtggatgtcttagcagagtgggggtctctctacgtgctgactagagatgggaag
atccatgcgcttcaggagagggatactcagaccaaacttgaggcattggggttggaaaag
tccatagcgatggagaacaagacactgaggagaactcaggatgaaaatggcctgaaaaac
agagttatccgagtgggcaccaggaagagtcagctggcccggattcagacagacagtgta
gtggaaatgcttcgcaagcgatatctcagccttcattttgagattgttgccatgtcaaca
actggagacaagatcctggacactgctctttccaagattggagagaagagcctctttacc
aaggagctggaaaatgcactggaaaaaaatgaagttgacctggttgttcactccttgaag
gacctgccaacttcgctcccgcctggcttcaccattggggccatctgcaaaagggaaaac
ccccatgatgctgtcgtttttcatcccaagaactatgggaaaaccctcaacagccttcct
gaaaagagcgtgattggaaccagttcacttcggcgagcagctcagctcaaacggcggttc
cctcagctggaattcagggatattagaggaaatttaaacacccgcttgaaaaagctggat
gaaaaggacgacttcagtgccataattctggctgctgctggactgaggaggatgggctgg
gaaaatcgtattggtcagatcttaaaccctgaagattgcctttatgctgttgggcagggt
gccttagcagtagaggtccgagctagagacgaagagatattggatatggtatccgccttg
catgatgcggaaacggtgctgtgctgcattgccgagagagcctttatgagacacttggag
ggtggatgtagcgttcctgtagcagtcagtaccatgctgaaagactcccagttgtatttg
acaggagctgtttacagcttggatggatcagatagcctgaaggacactatgcagactggt
gttaactacccacagcagaatcaagaaggacccaatgatgatacacagtatgttggcatc
acagccaagaagattcctcgtcatgctcaggaggctgcagaaaacctgggtgtcgaacta
gccagcttactgctgagcaagggtgctaagcgtatcctcagtgttgcaaggcagctcaat
gatgcccgatag
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