Chelonia mydas (green sea turtle): 102943366
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Entry
102943366 CDS
T02989
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03015
mRNA surveillance pathway
cmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102943366 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
102943366 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102943366 (PABPC1)
03041 Spliceosome [BR:
cmy03041
]
102943366 (PABPC1)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102943366 (PABPC1)
mRNA cycle factors
Stress granule specific factors
102943366 (PABPC1)
Spliceosome [BR:
cmy03041
]
Complex C
Other components
Complex C specific factors
102943366 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
102943366
NCBI-ProteinID:
XP_007067244
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All DBs
Position
2:37702507..37727399
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAALPPTQNRA
AYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcttccctgtacgtgggggacctgcacccc
gacgtcaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgccgggacatgatcacccgccggtctctgggctacgcctatgtcaacttccag
caacccgccgacgctgaacgagctttggataccatgaacttcgacgtcattaaaggcaag
ccagtgcgcatcatgtggtctcagcgtgatccatctctacgcaaaagtggtgttggaaac
atcttcatcaagaacttagacaaatcaattgataataaagctttgtatgatacattttct
gcttttggaaacatcctctcctgtaaggtagtatgtgatgaaaatgggtctaagggctat
ggatttgtacattttgagacacaggaagcagcagaaagagcaattgaaaaaatgaacggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgtaaagaacgagaa
gcagaacttggagctagagcaaaggagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgaaagacttaaggaactctttggcaagtttggccctgccttaagtgtg
aaagttatgaccgatgagagtggaaaatccaagggctttggctttgttagctttgaaaga
catgaagatgcccagaaagctgtggatgagatgaatggaaaggagctcaatggaaagcaa
atttatgttggccgggctcagaaaaaggtggaaagacaaacagagctcaagcgcaaattc
gaacaaatgaagcaggataggatcaccagataccagggtgtaaacctttatgtgaaaaat
cttgatgatgggattgatgatgagcgtctacgaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggtggccgcagcaaaggatttgggtttgtatgcttt
tcttcaccagaagaagcaaccaaagctgtcacagaaatgaatggtagaattgtggccact
aaaccattatatgtagctctagcccaacgcaaagaagagcgccaggctcacctcaccaac
caatatatgcaaagaatggcaagtgtgagagcagtacctaatcctgtaatcaacccctac
caaccagcacctccttcaggttacttcatggcagctctcccaccgactcagaaccgtgct
gcatattatccaactagccaacttgctcaactcagaccaagtcctcgctggactgctcag
ggtgctagacctcatccattccagaacatgcctggtgctatccgcccagcagctcccaga
ccaccatttagtaccatgagaccagcttcttcacaggttccacgagtcatgtcaacacaa
cgtgttgctaatacatcaacacagacaatgggtccgcgtcctgcagcagctgctgctgcg
gccactcctgctgtacgcacagttccacagtacaagtatgctgcaggtgttcgtaatcct
caacaacatcttaacacacagccacaggttgctatgcagcagccagctgtccatgtgcaa
ggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaagcag
atgttaggtgaacggctgtttccccttattcaagctatgcaccctactctggcgggtaaa
atcaccggtatgttgttggagattgacaactctgaactccttcatatgcttgagtctcct
gagtctcttcgttcgaaggttgatgaagctgtagctgtattacaagcccaccaagctaaa
gaggctgctcagaaagcagttaacaatcccactggggttccaagtgtttaa
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