Chelonia mydas (green sea turtle): 102943464
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Entry
102943464 CDS
T02989
Symbol
USHBP1
Name
(RefSeq) Usher syndrome type-1C protein-binding protein 1 isoform X2
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cmy03037
]
102943464 (USHBP1)
Cilium and associated proteins [BR:
cmy03037
]
Primary cilia and associated proteins
USH complex and associated proteins
102943464 (USHBP1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
FliJ
DUF1802
KLRAQ
Motif
Other DBs
NCBI-GeneID:
102943464
NCBI-ProteinID:
XP_037741913
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All DBs
Position
25:complement(13100314..13114900)
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AA seq
794 aa
AA seq
DB search
MQGIRAMVGAGSQIFRHERSLRCLGFSGRGSLQGELDSISEREEEADVAGADERAILRYE
EHITTLLVTITQLHSKAEQLQQRRTREEDEYSDQCSEYTASLPRCVQRPCSLAIRPFPMG
CMEEGGSSDVFLDLQQAVASLENAVFSRRSQARLLGSAGGETGAGSPSAVGEEWAQIAKT
LEEVERGLGGFAGLPEDNRSCPWKAAPRAQGEKTSEASPGLSAEDMSWIKKEIATYAERN
AALRVALESKEEELSRSKVTLQAFQEEREKLQRKVQELQDSLLRIETLSQPCSPSASASD
TVSTRGSVSPGGEGEPWPLQDPVAAAQSLIRCFQSCSSTQHLCRLFPQHRPPASESHVRE
WEARTQQLRGCIERLKGLNQLLSGTLQEWKGHSERLSMLLGQHESNSTALRLAAQYSERC
VEAYEVLLSLAGVKLGPWLEPVEEGDALDKGEPGARAPNSPGGRTGAVLEEARRFLGRAE
PEGEEAGSGQDGAGTHGWESTPSPGALGPRGAEEGILHEYIRQLRAEQASVEVSLLELGC
QAAPGSAGAVIQSNDTIKAKLDEAVRVAGGVLPRETPRPKMEKPQLLHDLVAIRESMADL
KTRLHLAEKETRGLELCSYTHRAQEAAHLLLIEHLQGELDGQRGRRPSSGSSSSGDSTSC
SSCLGDVGRREAEAARPQAALDRETMMLELVGALARSRELRGQAQGLAASLEHRSTTSRV
QQAQCVGITRDFFQAHSALVLAYRNARRKQEAQLQRLEAQMGAMGERHAEQLRSLTQALQ
RLEERRVAGSETCI
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgcagggaatcagggccatggtcggtgcaggctctcagatctttcggcatgaaaggagc
ctgagatgtctggggttctctgggcggggttctctgcagggcgagctggactcaatctct
gagagggaggaggaggccgacgtagcaggggcggacgagcgggcaatcctgcgctacgag
gagcacatcaccacactgctcgtcaccatcacccagctccacagcaaggccgagcagctg
cagcagaggagaaccagagaggaagatgagtattcagatcagtgctccgaatacacagcg
agccttcccaggtgtgtgcagaggccctgcagcttagccatccgtccgttccccatgggc
tgcatggaggaaggaggcagctccgacgtgttcctagatctgcagcaggctgtggcctct
ctggagaatgccgtgttctcccggcggagccaggctcggctgcttggcagtgctggtggg
gagacgggcgcaggcagccccagcgcggtgggagaggagtgggcccagatagccaagacc
ctggaagaggtagaacgaggcctggggggttttgcgggactcccagaggacaacaggagc
tgtccctggaaggcagcacccagggcgcagggggagaagacgagcgaggccagcccaggg
ctctcagccgaggacatgagctggatcaagaaggaaatagccacatacgcagagaggaat
gcggctctccgggtggcgctagagagcaaggaggaggagctaagcaggtccaaggtcacc
ctgcaagcattccaggaggaacgggagaagctccagagaaaggtccaggagctgcaggac
tcactgctccgaatcgagacactgtcccagccctgcagcccctcagcatctgccagtgac
actgtcagcaccagggggtcggtcagccccggcggggaaggggagccctggccgctccag
gacccagttgccgcggcccagagcctgatccggtgctttcagagctgctccagcacccag
cacctctgccgcctgttcccccagcaccgccccccagcgtcggagagccacgtcagggag
tgggaagctcggacgcagcagctgcgagggtgcatcgagaggctcaaaggcctgaaccag
ctgctctcggggacgctgcaggagtggaagggccactcggagaggctcagcatgctgctg
gggcagcacgagtccaacagcacggccctgcgcctggccgcgcaatacagcgagcgctgc
gtggaggcctacgaggtgctgctgtccctggccggggtgaagctggggccctggctggag
ccagtggaggagggagatgccctggacaaaggagagcccggggcgcgcgcccccaacagc
cccggcggcaggacgggggctgtgctggaagaggccaggaggttcctggggagagcggag
cctgagggcgaggaagccgggtcggggcaggacggggctgggacccatggatgggaaagc
acccccagccccggggccctggggccccgaggggcggaggaggggattctgcacgagtac
atccggcagctgcgggcggagcaggcctcggtggaggtctccctgctggagctgggctgc
caggccgcgcctggttctgccggtgccgtgatccagagtaacgacaccatcaaggccaag
ctggacgaggccgtcagggtcgcaggcggggtcctgcccagggagacaccaaggccaaag
atggagaagccacagctactgcacgacttagtggccatcagggagtcaatggcggatctg
aagacccggctgcacctggcggagaaggagacgcgaggcctggagctctgcagctacaca
caccgggcgcaggaggccgcccacctgctgctcatcgagcacctgcagggggagctggac
gggcagcggggccggcgccccagctccgggagcagcagtagtggagacagcaccagctgc
agcagctgcctcggggacgtcgggagacgggaggcagaagctgctagaccccaggctgcc
ctggatcgggagacgatgatgctggagctggttggggcactggcccggagcagggagctg
aggggccaagcccagggcctggcggcctccctggagcaccgcagcacgaccagccgggtg
cagcaggcccagtgcgtcgggatcaccagagacttcttccaggctcacagcgccctggtg
ctggcctacaggaatgccaggaggaagcaggaggctcagctgcagaggctggaggcccag
atgggtgcgatgggcgagcggcatgcggagcagctgcgctcgctcacacaggctctgcaa
aggctggaagagcgtcgcgtggccggcagcgagacctgcatctag
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