Chelonia mydas (green sea turtle): 102944085
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Entry
102944085 CDS
T02989
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03013
Nucleocytoplasmic transport
cmy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102944085 (UPF3A)
03015 mRNA surveillance pathway
102944085 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102944085 (UPF3A)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102944085 (UPF3A)
mRNA cycle factors
P-body specific factors
102944085 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
102944085
NCBI-ProteinID:
XP_037737199
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All DBs
Position
1:110308428..110358183
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AA seq
487 aa
AA seq
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MRSEREAGPGLARGGGREKRPMETPLRRESPRREPETPPPPPGPPPPPHPALGRQREEKR
AALSKIVIRRLPPSLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPDDI
LLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESY
CADEEKICANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRREL
EKKRLREEEKRKRREEERRKRKEAEKQKKIAEKEIRIKLLKKPEKGDDLASEMNKEKGEE
ADIEESKWEKSPGSGSIKSKPLEGSPKELKEKSQNDSDKEQMDLERRFREKDLERPRYRL
DDGRKHRAHYEFDKFVRRNEEELKWGKAYSQDRGKKGNHNYSFTVEAVDKLGKEDKCDDM
ASKKERIRNKDRPAMQLYQPGARIRTHTGSTSKIYDCSGKSSEDACDRKYEVDNSTGGGS
EKSEEAE
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcggagcgcgaggccgggccggggctggcgcgcgggggcggccgggagaagcgg
cccatggagaccccgctccggcgggagtccccgcgccgggagcccgagacccccccgccg
cccccggggccgcccccgccgcctcacccggcgctgggcaggcagcgggaggagaagaga
gcggcgctgagcaagatagttattcgccggcttcctcctagtctaaccaaggagcaactg
gaagagcagctacatccgctacctgcccatgattattttgaattttgcactgctgatccc
agtctgtatcctcatctctactcaagagcatacattaattttagaaatcctgatgacatc
cttctttttagggatcgctttgatggctatgtcttcattgataataaaggtttggaatat
cctgctgtggtagaatttgctccattccaaaagatttcaaaaaagaagctaaagaaaaaa
gatgcaaaagctgggagcatagaggatgatccagaatataggaagtttttagaaagttac
tgtgccgatgaagagaaaatctgtgctaatcctgagactctgttgggagagattgaggca
aaaacaagggaacttattgctagaagaacaacacctcttttggaatatattaaaaataga
aaattagaaaagcagaggatacgcgaagaaaaaagggaagaacgaaggaggagagagtta
gaaaagaaacgtctgcgagaggaagagaaaagaaagcgcagagaagaagaaagacgtaaa
agaaaagaagcagagaagcaaaagaaaattgctgaaaaagaaataaggatcaagcttctt
aaaaagcctgaaaagggagatgacctggccagtgaaatgaataaggaaaaaggagaagaa
gctgatattgaagaaagcaaatgggaaaaatcacctggatccgggagtataaaatccaag
ccattggagggctcaccaaaggaacttaaggaaaagtcacagaatgatagtgataaagag
caaatggatttggagagaagatttcgagaaaaagaccttgaaagaccaagatatcggttg
gatgatggcagaaagcatagagctcactatgaatttgacaagtttgtgagaaggaatgaa
gaagagctgaaatgggggaaagcatacagccaagacagagggaagaaagggaaccacaac
tacagcttcactgtggaggccgtagacaaactgggtaaagaggacaagtgtgatgacatg
gcatccaaaaaggagcgcataagaaataaggatcgtccagccatgcagttataccagcca
ggagctcgcattcgaacacatacgggatctacaagtaagatctatgactgcagtgggaag
tcctctgaagatgcctgcgatagaaagtatgaggtagataattcaactggaggtggttct
gagaagagtgaggaggcagaatga
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