Chelonia mydas (green sea turtle): 102945920
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Entry
102945920 CDS
T02989
Symbol
SUPT5H
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
102945920 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmy03021
]
102945920 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102945920 (SUPT5H)
Transcription machinery [BR:
cmy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
102945920 (SUPT5H)
RNA polymerase I system
102945920 (SUPT5H)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
102945920 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW
KOW4_SPT5
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
102945920
NCBI-ProteinID:
XP_037740641
LinkDB
All DBs
Position
23:3816232..3847839
Genome browser
AA seq
1081 aa
AA seq
DB search
MSDSEDSNFSEDESERSSEAEEVENEAEEEHASVAGSEKEEAEEEEEEEEEDYDEEEEED
DDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSG
ARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWT
VKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEG
VGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQN
QISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIF
EGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQ
PGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVI
AGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQ
LDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVK
VIDGPHSGREGEIRHLFRGFGFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGG
FAPMSPRISSPMHPSAAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKD
ATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSAYGRTPMYGSQTPMYGSGSRTPM
YGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEEFEYGFDDEPTP
SPQGYGGTPNPQTPGYPDPSSPQVNPPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSP
SPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPH
TPGSGIEQNSSDWVTTDIQVKIRDTYVDSQVVGQTGVIRSVTGGMCSVYLKDSEKVVSIS
SEHLEPVIPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLEEQLKILNLRFLGKLLE
P
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatagcgaagacagcaacttctccgaggatgagagtgagcggagcagcgaggcg
gaggaggtagaaaacgaggcagaggaggagcatgccagcgttgcgggcagcgagaaggag
gaggctgaagaagaggaagaggaggaggaagaagactatgatgaggaggaagaggaggat
gatgatgatcggccgccaaagaagcccagacatggagggttcatcttggatgaagccgat
gtggacgatgaatacgaagacgaggaccagtgggaggacggcgcggaggacattctggag
aaagaagaaattgaagcctccaacattgataatgtggttctggacgaggatcgctctggg
gcccggaggctgcagaacctgtggagggaccagcgcgaggaggagctgggcgaatattac
atgaagaaatacgccaagtcctccgtgggagaaacggtgtacggcggctctgatgagctt
tcggatgacatcacgcagcagcagttactgcccggtgtcaaggatcccaacctctggacc
gtgaagtgtaagatcggagaggaacgtgccacagccatagccctgatgaggaaattcatc
gcctaccagttcacagacacgcccctgcagatcaagtctgtggtggcccccgagcatgtg
aagggctacatctatgttgaggcctacaagcagacccatgtgaagcaggccattgagggc
gtgggcaacctgcggatgggctactggaaccagcagatggtgcccatcaaggagatgaca
gacgtgctgaaggtggtgaaggaggtgaccaacctgaagcccaagtcctgggtccggctc
aagagaggcatttacaaggacgacattgctcaggtggattacgttgagccgagccagaac
cagatctctctgaagatgatcccgcggatcgattttgaccggatcaaagctcgcatgagc
ctgaaggactggttcgccaagcggaagaagttcaagcggcccccccagcggctgttcgat
gctgaaaagatccggtccttggggggagatgttgcttccgacggtgatttcctcatcttt
gaaggcaatcgttacagtcgcaagggcttcctcttcaagagctttgccatgtcggctgtg
atcacggagggggtgaagcccaccctgtctgagctggagaagtttgaggaccagccggaa
ggcatcgatctggaggtggttaccgaaagcacagggaaggaacgggaacacaacttccaa
cctggcgacaacgtggaggtgtgcgagggggagctgattaacctgcagggcaagatcctg
agcgtggacggcaacaaaatcaccatcatgcccaagcacgaggatctcaaggacatgctg
gagttcccagctcaggagctgcgtaagtacttcaagatgggagaccacgtcaaggtgatc
gctgggcgctttgagggcgacacgggactgatcgtgcgggtggaggagaacttcgtcatc
ctcttctcggacctcaccatgcacgagctcaaggtgctgcctcgggacttgcagctctgc
tccgagacggcttccggcgtggacgtgggtgggcagcacgagtggggtgagctggtccaa
ctggatccgcagaccgtcggagttatcgtccgcctggagcgggagaccttccaggtcctg
aacatgtacggcaaagtggtgacggtcaggcatcaggctgtgacgcggaagaaggataat
cgctttgctgtggccctggactcggagcagaataatatccacgtcaaggacatcgttaaa
gtcattgacgggccgcactcgggtcgcgagggggagatcagacacctcttccgtggcttt
ggattcctgcactgcaagaagctggtggagaatgggggcatgtttgtgtgtaagactcgc
cacctggtgctggctgggggctcaaagccccgggacgtcaccaacttcactgtcggtggc
tttgcgcccatgagtcctcggatcagcagccccatgcaccccagcgcagcaggtcagcga
ggtggcttcggcgggggcgggatgagccgaggccgcggacgcagggacaacgacctgata
gggcagacggtgcggatctcccagggaccctacaaaggctacatcggcgtggtgaaggat
gccacggagtccacggcccgcgtggaactccattccacctgccagaccatctcagtggat
cgccagcgcctcacgacagtgggttcgaggagacctggcggcatgacctccgcctacggc
cgcacccccatgtacggctcgcagactcctatgtacggctccggctcccgcacccccatg
tacgggtcgcagactccgctgcacgacggcagcaggaccccgcactacggctcccagacg
ccgctgcacgacgggagccggacgccagcgcaaagcggggcttgggaccccaacaacccc
aatacgccctccagggcggatgaggagtttgaatacggcttcgatgacgagcccacgccc
tctccgcaaggctacggggggacccccaacccccagactcccggctaccccgacccttcg
tctccgcaggtcaatccgccgtacaatccgcagacgccggggaccccagccatgtacaac
actgatcagttttctccgtacgctgttccatctcctcagggctcctatcagccaagcccc
agccctcagagttaccaccaggtggcgccgagccccgtgggctaccagaacacccactcg
ccagccagttaccacccgaccccgtcgcccatggcgtatcaggccagccccagtcccagc
ccagtgggctacagccccatgacgccaggggctccttctccagggggttacaacccgcac
acccccggctccggcattgagcagaactccagcgactgggtcaccaccgacatccaggtc
aaaattcgagacacctatgtggacagccaggtggtggggcagacgggagtcatccgcagt
gtgacgggcggaatgtgctcagtctacctgaaggacagcgagaaggtggtcagcatttcg
agtgagcacctagagcccgtcataccgaccaaaaacaataaggtgaaggtgatcctgggg
gaggaccgggaggcgacaggcgtcctcttgagcatcgacggagaggatggcattgtccgc
atggacttggaggagcagctcaagatcctcaacttgcgattcctgggcaagctgctggag
ccgtag
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