Chelonia mydas (green sea turtle): 102946297
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Entry
102946297 CDS
T02989
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04510
Focal adhesion
cmy04512
ECM-receptor interaction
cmy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102946297 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102946297 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102946297 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmy04147
]
102946297 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102946297 (COL4A3)
Exosome [BR:
cmy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102946297 (COL4A3)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102946297 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102946297
NCBI-ProteinID:
XP_037765025
LinkDB
All DBs
Position
9:complement(34209518..34313689)
Genome browser
AA seq
1670 aa
AA seq
DB search
MARGGCLGLLLFALLSSVRWPDGFAAAKSCVCKRKSHCYCDGMKGNKGEKGFPGAQGVPG
QTGFRGPEGPPGPQGPTGFPGLIGLVGPKGERGMLGLPGFSGLPGLPGEPGNIGPPGGPG
IPGCNGPKGEQGFPGPPGPGGAPGKPGIDGFKGDKGCPASGYDPGYDRRGDPGLPGISGR
QGEPGPRGLQGLVGPQGPPGSSGVSGRMGLPGRKGVMGIKIIGTKGIQGEPGSTGPPGPP
GTVIVTLSEPDHMKDLKGEKGEKGSRGLPGPVGSLGFPGDFQSQKGDPGEPGPQGNPGKD
GTPGPHGFLGEKGEHGYAGLPGRAGTKGRKGDIGPPGFPGPTKYYDEVAGEKGDEGYPGP
PGLKGQPGIPGPRGPLGVTGRPGVSRPGINGPQGYPGLKGIKGERGQPGMNAVGSPGLHG
FPGRPGSVGSPGPPGQPGKVTFETHPPGVPGNPGCVGPPGLPGDSGVKGEEASPCNQCSY
ILGGPGLPGAPGQDGQEGVTGRQGIGGPKGSRGSPGGQGPSGPQGLPGFPGDKGLKGPKG
EPGCVYPEGQKGNRGDPGIRGNPGKKGSDGLHKKHGSKGSKGSKGERGLDGLKGDRGLSG
LPGNPGLPGEMGLTGPPGYGPQGMTGPKGAKGISGLPGLPGAIGPEGELSAVNPIPGPPG
PWGPQGLPGPPGAMGNVGSRGKRGDLGLPGSDGAPGFSGTVFPGDPGPKGNKGLRGSKGS
PGLPGKAGKPGLPGQSGYPGEKGDPGLIIPGQQGGLGSPGEDGFPGVKGDRGFPGLPGFP
GRNGADGPRGEPGCPGAPGEKGLPGKLGDCLIGPQGLPGACGLTGQQGERGSVGSKGDPG
IPGLDVSGFPGEFGLPGLPGRQGDAGSPGLKGEPGSPGIPGAPGQRGEQGIMGNLGIPGH
PGVFGYPGIPGNRGSPGLPGLKGRKGSLGAKGEPGDKGFPGPSETTGNTGDKGEPGSTGF
PGRTGLKGERGDKGIQGSAGLDGTSGVSGLPGPKGVVGLPGFPGRQGLPGPPGDRGDMGM
PGSKGERGSRGLPGPSGAQGPPGLLGFSGDKGEPASSASGPPGKPGPKGDPGPPGEMGRK
GERGSPGQPGLVGEPGLAGNRGDCGKPGAPGPSECAGDTGTKGCKGVAGPRGTEGPPGAI
GAPGANGAVGERGNQGRDGLPGSPGEKGERGEPGWQIPGPQGISGPKGIKGDKGIPGCPG
PEGIKGLMGDPGPMGPPGLNGKPGFPGAPGITIPGQKGNRGLAGVNGRLGIPGSPGSSGT
PVYSIKGNKGVRGIDVIPGPPGLVGSIGPQGSTGVEGTPGNAGPRGEPGFTGLPGVTGEK
GNRGPPGPMGAAGPIGPKGHPGQPGALRKATYIPGNQGPAGSPGSPGLPGDPGPRGPPGL
HGPQGVKGLPGHSGNPGILGPVGPKGDRGFQGQRGCPGLIGFPGIRGLPGSPGISIAGPT
RRGFIFTRHSQSTKIPSCPSGTAQIYSGYSLLFVQGNEQAHGQDLGTVGSCLQRFTTMPF
LFCNTNDVCNFASRNDYSYWLSTTAPMPEDMEPISGSALQPYISRCIVCEGPAVVIAVHS
QTTALPLCPQGWISLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGRGTC
NYYTNSYSFWLASLDPRRMFRKPLPQILKAGELENIISRCQVCMKRDRNF
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgggggctgcctggggctgctgctcttcgccctgctcagcagcgtgcgctgg
cccgacggcttcgccgccgccaagagttgtgtctgcaaacgtaaaagccactgctactgt
gatggaatgaaaggtaataagggtgaaaaaggatttcctggtgctcaaggtgtacctggc
cagacgggtttccgcggccctgagggacctccagggcctcagggacccacgggttttcca
ggcctgataggtttagtcggacccaaaggtgaaaggggaatgctaggattgcctggtttt
tcaggtctcccaggtcttccaggtgaaccaggaaacattggtcctcctggaggtccagga
attccaggatgcaatggtccaaagggtgaacaaggatttccagggcctccagggccagga
ggtgctccgggcaaaccaggtattgatggcttcaaaggagataaggggtgccctgcaagt
ggatatgacccaggatatgacagaaggggtgaccctggattaccaggaatatctggacgc
caaggtgaaccaggtcctcgaggactccaagggctagttggaccacaaggccctccggga
tcttcaggtgtttcagggagaatgggacttccaggacgtaagggtgtcatggggattaag
atcataggaaccaaaggaatacagggtgaacctggatcaacaggaccccctgggccccca
ggaacagttattgtgacattaagcgaaccagatcatatgaaggacttgaaaggagagaaa
ggagagaaaggatcaaggggtctcccaggacctgttgggtcattgggttttcctggagat
tttcaaagtcaaaaaggtgacccaggagagcctggcccacagggtaaccctggaaaagat
ggtacccccggtccacatggctttctgggagagaagggtgaacatggctacgcaggattg
cctggcagagcaggcactaaggggaggaaaggagacattggcccaccaggatttcctggt
cccacaaagtattatgatgaggtggctggtgaaaaaggagatgaaggatatccaggaccc
ccaggacttaaaggtcaacctggcatacctgggccaagaggtcccctaggtgtgacagga
agaccaggtgtatcgagacctggcataaatggtccacaaggatatccaggactgaaagga
attaagggagagagaggacagcctggcatgaatgctgtgggatctccaggacttcatggg
tttccaggcagacctggctctgtaggatcaccaggtcctccaggacagccaggtaaagta
acgtttgaaacgcacccaccaggagttccaggaaaccccggatgtgtgggacctccagga
cttccaggagatagtggagtgaaaggtgaagaagcaagtccctgtaatcaatgcagttat
atactaggaggacctggacttcctggtgctcctgggcaagacggtcaagaaggagttact
ggtagacaaggaataggtggtcccaaaggatctcgaggttctccagggggacaaggtcct
tcaggtcctcaaggacttccaggttttccaggagataaaggacttaaaggaccaaaaggt
gaaccaggatgtgtgtatccagaagggcaaaaaggaaacagaggagatccagggatcaga
ggaaatccagggaagaaaggttcagatggattgcacaaaaaacatggttcaaaaggctca
aaaggttctaaaggcgaacggggactggatggtttgaaaggggacagagggttatcagga
cttcctggaaacccaggtcttcctggagaaatggggctcactggaccaccaggatatgga
ccacaaggaatgacaggtcccaaaggtgctaagggaatatctggtttgcctggattgcct
ggagcaattggtcctgaaggagaacttagtgcagtaaatccaatacctggaccaccagga
ccttgggggccacagggtttaccaggacccccaggagcaatgggtaatgttggatctaga
ggaaaacgtggtgatttgggattacctgggtctgacggtgctccaggattttcagggact
gtatttcctggagatcctggtccaaaaggaaataaaggtcttcgagggtctaaaggatca
ccaggtttgccaggaaaggcaggaaaaccaggcttgccgggacagtctggatacccagga
gaaaagggagaccccggattaattattcctggccaacagggtggattaggttccccagga
gaagatggctttccaggggtaaaaggtgacagaggatttccaggtctaccaggattccca
ggacgtaacggtgctgatgggccaagaggagaacctggctgtcccggagctcccggagaa
aagggacttccagggaagcttggtgattgtcttattggcccacaaggtctcccaggtgca
tgtggattaacaggccaacaaggagaaagaggttcagttggatcaaaaggagaccccggt
attccaggcttggatgtctcaggattccctggagagtttgggctgcctggattgccaggt
cgccaaggagacgcaggatcacctggtctcaagggtgagcctggcagcccaggaatacca
ggtgcaccaggccaaagaggagaacaaggtataatgggcaatttaggaattcctggacat
cccggtgtctttggatacccaggcattccaggaaacagaggttctcctggccttccagga
ttgaagggaagaaaggggtccttaggagcaaaaggtgaaccaggtgataaaggatttcct
ggaccatcagagaccacagggaatactggggataaaggagaaccaggatcaacaggattt
ccaggaagaacaggtctgaaaggagaaagaggagataaaggtatacaaggatcagcaggg
cttgatgggacatcaggagtatcaggtctgccaggtcccaaaggagttgtaggtctgcca
ggatttcctggaagacaaggattaccaggacctccaggagacagaggtgatatgggaatg
ccaggttctaaaggggagagaggatctcgaggtttaccaggaccatctggtgcacaaggc
cctccaggccttcttggtttttcaggtgataaaggagaaccagctagttcagcatctggg
cctccaggaaaaccaggaccaaagggtgatccaggtcccccgggagaaatgggaagaaaa
ggggaaagaggatcaccaggtcagccaggacttgtgggagaacctggactagctggaaac
aggggggattgtggaaaaccaggagctccagggccatctgaatgtgctggagatactggc
actaaagggtgcaagggtgtggcaggaccgagaggcactgaaggccctccaggtgcaata
ggagcccctggagccaacggagctgttggagaaagggggaatcaaggacgggatggtctt
cctggctccccaggggaaaagggagaacgaggtgaacccgggtggcagattccaggtcca
caaggtatttctggtcctaaaggaatcaaaggtgacaaggggattcctggttgtccagga
ccagaaggtattaaaggtctaatgggggatccaggaccaatgggacctcctggattgaat
ggaaagccaggattcccaggtgcaccaggcataacaattcctggccagaaaggaaataga
ggtcttgccggagtgaatggaagactgggtattcctggtagtccaggatcttctggaacc
cctgtgtacagcataaaaggaaacaaaggtgttagaggtatagatgtcataccaggacca
ccaggattggtaggcagtattggtcctcaaggttcaacaggagttgaaggcaccccaggc
aatgcaggccctagaggtgaacctggctttacaggacttccaggtgtaacaggagaaaag
ggtaatcgaggaccccctggaccaatgggtgcagcaggacctattggaccaaagggccac
cctggtcagcctggagcacttaggaaagcaacatatatcccaggaaatcaaggacctgct
ggatcacctggaagcccaggactaccaggagatccaggacctcgagggccaccaggatta
catggacctcaaggtgtaaaaggtctaccaggccattctggaaatccaggcatacttgga
ccagttggtccaaaaggagacagaggatttcaaggacaaagaggatgtcctgggcttatt
ggctttccaggaatacggggcctacctggttcccctggtatttccatagctggtccaaca
agaagaggcttcatctttacccggcacagccagtcaacaaagattccatcatgcccatct
gggacagctcagatctacagtggttattctcttctctttgtacaaggaaatgagcaagca
catggccaagaccttgggacagttggtagctgcctgcagcgatttaccaccatgccattt
ttattctgtaacaccaatgatgtttgcaattttgcttctcgcaatgactattcatactgg
ctgtcaactacagcaccaatgccagaagacatggaaccaatctctggcagcgccttacag
ccctatattagcagatgtattgtttgtgaaggaccagcagtggtaatagcagttcacagc
caaacaactgcacttcctttatgtcctcaaggctggatatctctgtggaagggtttttcc
tttgttatgtatacaagtgccggttcagaagcctctggccaagcattggcatcacctgga
tcctgcttggaagaattccgtgccattccattcatagaatgtcatggtagagggacatgc
aactactacacaaattcctacagcttctggctggcttcactggatccaaggagaatgttc
aggaagcctttaccacagattttaaaagccggggaattggaaaacatcatcagccgctgt
caggtctgcatgaagagagacagaaatttttga
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