Croceicoccus naphthovorans: AB433_02050
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Entry
AB433_02050 CDS
T03964
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cna
Croceicoccus naphthovorans
Pathway
cna03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB433_02050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cna03400
]
AB433_02050
Enzymes [BR:
cna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AB433_02050
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AB433_02050
DNA repair and recombination proteins [BR:
cna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AB433_02050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AKM09027
UniProt:
A0A0G3XD10
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All DBs
Position
404005..404817
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AA seq
270 aa
AA seq
DB search
MPELPEVETTVRGLARYLEGERIARVTLNRPDLRRPFPPDLVQMMTGARVERLGRRAKYG
LIDLDRGQTMIFHLGMSGRWRIDPEEVGKHDHLVVETGAGHVLALNDARRFGSVDLWPTD
DLAGFRPFTDMGPEPLGADLDAEHLADAFAGRISPIKVLLLDQRIVAGLGNIYVCEALHR
AGIRPDKPAGKVSMAKLKLLVPAIRDVLLESIAAGGSSMRDYAKPDGELGYFATQWQVYG
REGEPCHCSGTVERIVQSGRSTFFCRNCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgccagaagtcgaaacgaccgttcgcggtctcgcccgttatctggagggc
gagcggattgcacgcgtcaccctgaaccggcccgacctgcgccgcccgttcccgccggac
cttgtccagatgatgaccggcgcgcgggtggaacggctggggcggcgggcgaagtacggc
ctaatcgatcttgaccgggggcagacgatgatcttccacctcggcatgagcgggcgctgg
cggatcgatccggaagaagtcggcaagcacgatcatctggtggtcgagacgggcgcaggg
cacgtgctggcgctgaacgatgcgcggcggttcggatcggtcgatttgtggccgacagat
gatctggcggggtttcgcccgttcaccgacatggggccggagccgctgggtgcggacctt
gatgctgagcatctggccgatgcctttgccgggcgcatctcgccgatcaaggtgctgctg
ctcgatcagcggatcgtggcggggctgggcaatatctacgtctgcgaggcattgcaccgc
gcgggcatccggcccgacaaaccggcgggaaaggtgagcatggcgaagctcaagttgctc
gtcccggcgatccgcgacgtgctactcgaatcgattgcggcgggcgggtcgtcgatgcgc
gactatgcgaagcccgacggcgaactgggatatttcgcgacccagtggcaggtctatggg
cgagagggcgagccgtgccactgcagcggcacggtcgaacggatcgtgcagagcgggcgc
agcactttcttctgccgcaactgccaacgctaa
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