Croceicoccus naphthovorans: AB433_05955
Help
Entry
AB433_05955 CDS
T03964
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
cna
Croceicoccus naphthovorans
Brite
KEGG Orthology (KO) [BR:
cna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cna03016
]
AB433_05955
Enzymes [BR:
cna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AB433_05955
Transfer RNA biogenesis [BR:
cna03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AB433_05955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AKM09628
UniProt:
A0A0G3XH01
LinkDB
All DBs
Position
complement(1173972..1174508)
Genome browser
AA seq
178 aa
AA seq
DB search
MSHRLFIAIRPPEPVIDAMIDVMDGIENARWQDEAQLHLTLRYVGEVDTPTANDIADALG
RIRFAPFDLTYRGVGHFERSHWPSAVWAGVVPSPGLDTLAKKVERACVSAGCAPETRRFT
PHVTLARLNRSSGPVGDWMARHGDFACAPVRVDHFTLYESTLSHSGSHYDPVVRFSLA
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaccgcctcttcatcgccatccgcccaccagaaccggtcatcgacgccatgatc
gacgtgatggacggcatcgagaacgcccgctggcaggatgaggcgcagttgcacctgacg
ctgcgctatgtgggcgaagtcgatacccccaccgccaacgacatcgccgatgcgctgggc
cgcatacgtttcgcaccgttcgacctgacctatcgcggcgtcgggcatttcgagcggagt
cattggcccagcgccgtctgggctggcgtggtgccctcgcccggactcgacacgctggcc
aagaaggtggagcgggcctgcgtttctgccgggtgcgcgcccgaaacgcggcggtttacg
ccgcatgtcacgctggcgcggcttaaccgcagcagcggcccggtgggcgactggatggcc
cggcacggcgactttgcctgtgcgccggtgcgggtcgatcatttcactctctacgaaagc
acgctgtcgcacagcggatcgcactatgatccggtggtgcggttcagccttgcttga
DBGET
integrated database retrieval system