Croceicoccus naphthovorans: AB433_11295
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Entry
AB433_11295 CDS
T03964
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cna
Croceicoccus naphthovorans
Pathway
cna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB433_11295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cna03019
]
AB433_11295
Enzymes [BR:
cna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB433_11295
Messenger RNA biogenesis [BR:
cna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB433_11295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
DUF2529
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AKM10416
UniProt:
A0A0G3XIH1
LinkDB
All DBs
Position
complement(2243217..2244695)
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AA seq
492 aa
AA seq
DB search
MNFDDLGLSQPVLQALSVQGYTTPTPIQQQAIPLILEGRDIMGIAQTGTGKTAAFTLPSI
DNLRKSDRGAPKKSCRMLVLAPTRELAGQIAKSAQEYGALSGLSVAFIVGGTSVGKDRQK
LARGVDILVATPGRLVDLVDQRALTLHGVETLVLDEADQMLDLGFIHALRKIVSWLPKER
QTLLFSATMPKSIRDLASNYLNNPAQVSVAPQSTTAEKVDQYVCFVSQPEKQALLTMSLR
KGLQSGEMDRVLVFTRTKHGADRVVKKLAQQGIEANAIHGNKSQPQRERALGEFRKGKVR
VLVATDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGRTARAGATGMAIAFCASDERDYL
RDIQRLTKVTLTQVPLPDSFRQEVERVGADPVRGPRPEGLSGRPRGRNPNAKITPRDGKP
RRDSRGQQQRREDGEQRREGGEQRREGGRGRPEGGQPRRDGGKRHNAGGQPPKRNRGPRG
GSQGRGPARSQG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatgatctcgggctatcgcagcccgtcctgcaggcgttgtccgtgcagggt
tacaccacgcccaccccgatccagcagcaggcgatcccgctgatcctggaaggccgcgat
atcatgggcatcgcccagaccggcacgggcaagacggcagcgttcacgctgccttccatt
gacaacctgcgcaaatcggatcgcggtgcgcccaagaaatcgtgccgtatgctggtgctg
gccccgacccgcgaactggcggggcagattgccaagtccgcacaggaatatggcgcattg
tcgggcctttcggtcgctttcatcgtcggcggcacatctgtcggcaaggatcggcagaag
ctggcgcgcggcgtcgacattctcgtcgccacgccggggcgtctggtcgatctcgtcgat
cagcgcgccttgaccttgcacggcgtcgagacgctggtgctggacgaggcggaccagatg
ctcgacctcggcttcatccatgcgctgcgcaagatcgtgtcgtggttgccgaaggaacgt
cagacgctgttgttttcggccacgatgccgaagtcgatccgcgatctggcgtcgaactac
ctgaacaacccggcgcaggtgtcggtcgcgccgcagtcgaccaccgcggaaaaggtggat
cagtacgtctgcttcgtcagccagccggaaaagcaggctctgctgacgatgtcgctgcgt
aaaggtctgcaatcgggcgagatggaccgcgttctggtcttcacccgtaccaagcacggc
gccgaccgcgtcgtgaaaaaactggcccagcaggggatcgaggcgaacgccatccacggc
aacaagagccagccgcaacgcgaacgcgcgctgggtgagttccgcaagggcaaggttcgc
gtgctggtcgccaccgacatcgcggcgcgcgggatcgacattccgggcgtcagccacgtg
ttcaacttcgaactgccgaatgtggccgaacaatacgtccaccgcatcggccgcaccgcg
cgcgccggggcgacgggcatggccatcgcgttctgcgccagtgacgagcgggattacctg
cgcgacattcagcgcctcaccaaggtgacgttgacgcaggttccgctgccggattcgttc
cgtcaggaggttgagcgcgtaggcgcagaccctgtgcgcggtccgcgtcccgagggtctg
tcgggccgtccgcgcgggcgcaatcccaatgccaagatcacgccgcgcgacggcaagccc
cgtcgcgacagtcgaggacagcagcagcgtcgcgaagatggcgaacagcgccgtgagggt
ggagagcagcgccgcgaaggcgggcgcggtcgccctgagggcggccagccccgtcgcgac
ggcggcaagcggcataatgccggtggccaaccacccaagcgcaatcgcggcccgcgcggc
ggtagccaagggcgcggtcctgcccgttcgcagggctga
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