Croceicoccus naphthovorans: AB433_15175
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Entry
AB433_15175 CDS
T03964
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cna
Croceicoccus naphthovorans
Pathway
cna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB433_15175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cna03021
]
AB433_15175
03400 DNA repair and recombination proteins [BR:
cna03400
]
AB433_15175
Enzymes [BR:
cna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB433_15175
Transcription machinery [BR:
cna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB433_15175
DNA repair and recombination proteins [BR:
cna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB433_15175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
YqfD
Motif
Other DBs
NCBI-ProteinID:
AKM11007
UniProt:
A0A0G3XII1
LinkDB
All DBs
Position
complement(3062602..3066921)
Genome browser
AA seq
1439 aa
AA seq
DB search
MNELTKFANPVAKTETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYVVIEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKIMLMELDLESEREALLEELATTKSTLKPAKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMELENEPGQGMAFSDMAEVHQALEV
GAVTLHSKITARVPQTDEAGNQYMARVETTPGRMLIGECLPKSHTVPFDVINRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMVLGFRHACRAGISFGKDDMIIPETKEAMIAETKALV
ADYEQQYQDGLITWQEKYNKAIDAWSRCGDQVAAEMMDRIKSQPVDEETGRMKPINSIYM
MSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVIVENDCGTENALEMRAIVQGGSTIASLGERILGRTL
AEDIVHAKTGEVLAKAGQLLDEAAIKVIEEAETQVAKIRSPLVCEAKQGVCGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAVSDGKLVYRDMPT
IVDKRGRRLSMARSGEILVIDAEGREREMHRVPYGTVIMFEDGAQVKQGDRMAEWDPFTL
PIITEQSGVVKYQDLVDTKTLEERVDEATGIAQRVVIEYRSAGRSKKEDLRPRITLLGQA
GDETEAARYLLAPGTTLSVEDGQEVQAGDILARASREAAKTRDITGGLPRVAELFEARKP
KDNAVIAKISGRMEFVRDYKAKRKIAIVPEEGDPVEYLIPKSKVIDVQEGDFVKKGDNLI
SGSPDPHDILEVLGVEALAEYLCTEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITNGGD
TTLLPGEQVDYEEMLEYNAKLDKGKQPAEGKPVLLGITKASLQTRSFISAASFQETTRVL
TQAAVEGKRDSLIGLKENVIVGRLIPAGTGAGMNRVRVAASSRDAALRAQYRKMQEALVA
AETAEQEHEAELAQGPEAAIGDDPLAAVEGETHGLDADAGDYLNEGAADHDGSVEDSED
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaaattcgccaatccggtcgccaagaccgagaccttcgaccagatc
cagatcggtcttgcctcaccagagcgcatccgttcgtggtcgttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagccggaacgtgacggcctgttctgcgcgcgc
atcttcggccccgtgaaggactatgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcactgtgaccaaggtccgccgcgaa
cgcatgggccacattgaactggccgcgccggtcgcgcacatctggttcctgaagtcgctg
ccttcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcgttctctac
ttcgaaagctatgtcgtgatcgagccgggcctgaccccgctcgaaaagttccagctgctg
accgaggacgagcttctcgacgcgcaggacgagtatggcgaagacgcgttcagcgccggc
atcggggccgaagcggtcaagatcatgctgatggagctcgacctcgagtctgagcgtgag
gcgctgctggaagagctggcgacgaccaagtcgacgctgaagcccgccaagatcatcaag
cgtctgaaggtcgtggaaagcttcatcgattcgggcaaccgtcccgaatggatgatcctt
gaagtcgtgccggttattccgcccgaactgcgcccgctggtcccgctggacggtggccgt
ttcgcgacgtcggacctcaacgacctctaccgccgcgtcatcaaccgtaacaaccggttg
aagcgcctgatcgaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagcggtcgacgccctgttcgacaacggccgccgtggccgcgtcatcaccggcgcg
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaaccttctgggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccgggccg
gaactgaaactgcaccagtgcgggttgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctgtcaatgaccctgaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatccttgacgaggtgatccgtgagcac
ccggtgatgctgaaccgcgcaccgacgctgcaccgccttggcattcaggcgttcgaaccc
gtcctcatcgagggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgttccgctgagccttgaggcacagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctctcgcccgcgaacggcaagccgatc
atcgtgccttcgcaggacatggtgctgggcctgtactacctgtcgatggagctggagaac
gagcccggtcagggcatggcgttcagcgacatggccgaagtgcaccaggcgctggaagtc
ggcgcggtcacgctgcactcgaagatcacggcccgcgtgccgcagaccgacgaggccggc
aaccagtacatggcgcgcgtggaaaccacgccgggccggatgctgatcggcgaatgcctg
ccgaagagccacaccgtgccgttcgacgtcatcaaccgccttctcactaagaaggaaatc
ggcgacgtcatcgatcaggtctatcgtcacaccggccagaaggacacggtcctcttcgcc
gacgcgatcatggttctgggcttccgtcacgcgtgccgtgcgggcatctcgttcggcaag
gacgacatgatcatccccgaaaccaaggaagcgatgatcgccgaaacaaaggcgctggtt
gccgattacgagcagcagtaccaggacggcctcatcacctggcaggaaaagtacaacaag
gcgatcgacgcctggagccgttgcggcgaccaggtcgcggccgagatgatggaccgcatc
aagtctcagcccgtggacgaagagaccggccgtatgaagccgatcaactcgatctacatg
atgagccactctggcgcgcgtggtagcccggcccagatgaagcagctggccgggatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccgcaaaggtctggcc
gacaccgcgctcaagacggcgaactcgggctatctgacccgccgccttgtcgacgtgtcg
caggactgcgtgatcgtcgaaaacgattgcggcaccgaaaacgcgctggaaatgcgcgcg
atcgtgcagggcggttcgaccatcgcctcgctgggtgagcgtattctgggccgcacgctg
gccgaggatatcgtccatgccaagaccggcgaagtgctggccaaggccgggcagcttctc
gacgaagccgcgatcaaggtgatcgaggaagccgagacgcaggtcgcgaagatccgttcg
ccgctcgtctgcgaagcgaaacagggggtttgcggcacgtgctatggccgtgaccttgcc
cgcggtacgccggtgaacatcggtgaagccgttggcgttatcgcggcacagtcgatcggt
gaaccgggcacgcagctgacgatgcgtaccttccacatcggcggcgcggcgcagctgaac
gaaaccagccaccttgaggcggtgtcggacggcaagctggtctatcgcgacatgccgacc
atcgtcgacaagcgcggtcgccgcctgtcgatggcccgcagcggcgaaatcctcgtcatc
gacgccgaagggcgcgagcgcgagatgcaccgcgtcccctatggtaccgtgatcatgttc
gaggacggcgcgcaggtgaagcagggcgatcgcatggcggaatgggatcctttcaccctg
ccgatcatcaccgagcagtcgggcgtcgtgaagtatcaggacctggtcgataccaagacc
ctggaagagcgtgtcgacgaagccaccggcatcgcgcagcgcgtcgtgatcgagtaccgt
tccgcgggccgttccaagaaggaagacctgcgtccgcgcatcacccttctgggtcaggcc
ggggacgagaccgaggccgcgcgttacctgctcgcccccggtacgaccctgtcggtcgag
gatggtcaggaagtgcaggcgggtgacattcttgcccgtgcttcgcgcgaagccgccaag
acccgcgacatcaccggcggtctgccgcgcgttgccgaactgttcgaggcgcgcaagccg
aaggacaacgcggtcatcgccaagatcagcggccggatggaattcgttcgcgactacaag
gccaagcgcaagatcgcgatcgttcccgaagaaggtgatccggtggaatacctgatcccc
aagtcgaaggtgatcgacgttcaggaaggcgacttcgtcaagaagggcgacaacctgatt
tcgggctcgcccgatccgcatgacattctggaagtgctgggcgtagaggctctggccgaa
tatctctgcacggagattcaggaagtctaccggttgcagggcgtgaagatcaacgacaag
cacatcgaggtgatcgttcgccagatgctgcagaaggttgagatcaccaacggcggcgac
accaccctgctgccgggcgaacaggtcgattacgaggaaatgctcgagtataacgcgaag
ctcgacaagggtaagcagccggcagagggcaagccggtcctgctgggcatcaccaaggcc
tcgctgcagacccggtcgttcatctcggccgcttcgttccaggaaaccacgcgcgtgctc
acgcaggccgcagtcgagggcaagcgcgactcgttgatcggtctgaaggaaaacgtcatc
gtgggccgtctcatccccgccggtaccggcgcgggtatgaaccgggttcgcgtggccgcc
tccagccgcgacgccgcgctgcgcgcccagtatcgcaagatgcaggaagcgctggtcgcc
gccgaaacggcggagcaggagcatgaggccgagctggcccagggcccggaagcggcgatc
ggcgacgatccgctggccgcggttgagggtgagacccatggtctggatgccgatgcgggc
gattacctgaacgaaggtgccgccgatcacgacggcagcgtcgaggacagcgaagactga
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