Croceicoccus naphthovorans: AB433_16860
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Entry
AB433_16860 CDS
T03964
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cna
Croceicoccus naphthovorans
Pathway
cna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB433_16860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cna03019
]
AB433_16860
03400 DNA repair and recombination proteins [BR:
cna03400
]
AB433_16860
Enzymes [BR:
cna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB433_16860
Messenger RNA biogenesis [BR:
cna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB433_16860
DNA repair and recombination proteins [BR:
cna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AB433_16860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AKM11950
UniProt:
A0A0G3XK55
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All DBs
Position
3401078..3402838
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AA seq
586 aa
AA seq
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MLEQLHAVFGFRTFRGVQQQVVDRVLRGESTLAVMPTGAGKSLTYQLPATMVGGTCVVIS
PLIALMHDQLRSAEANGIRAATLTSADENRAETVARLRAGELDLLYVAPERASQPHFREL
LGQCRIALFAIDEAHCVSEWGHDFRPDYRLLRPLMDLFPGVPRLALTATADAHTRSDILN
QLGIPEEGMIVAGFDRPNIRYTIRPREGLTQQLRRLLAANPGPGIVYAPTRAATERLAEA
LSDGRREVRAYHAGLPPEVRAANQSAFVASEDMVICATVAFGMGIDKPDVRFVAHAGLPK
SIEAYYQETGRAGRDGDPATAHLFWGADDFARARMRVQEVEEVRQQGERTRLSALGALVE
TAGCRRAILLRHFGETPPETCGNCDNCLEPPKSVDATVVAQKYLSAVARTRQMYGAGHIE
SVLLGQHSDRASQQGHDTLSVFGIVEGEEAALLKPVQRALLVRGALLPTEHGGLMLGPEA
RTYLKGEQPLDLVLPPKRERGRGRKTGGQALNPVGDPLFDALRELRRDMAKENGVPPYVI
FHDSVLRDMAGFRPQSREALADLPGIGGKKLDAYGEQFLTVIRQHS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
ttgctggaacagcttcatgcggtgttcgggttccgcacctttcgcggcgtgcagcagcag
gtcgtggaccgggttttgcgcggcgaatcgacattggccgtcatgcctacgggcgcgggc
aagtcgctgacctatcagttgcccgcaacgatggtgggtgggacgtgcgtggtgatcagt
ccgctgatcgcgctgatgcacgaccagttgcgcagcgcagaggccaacggcatccgcgcc
gcgacgctgaccagcgcggacgagaaccgtgcggagacggtagcgcgcctgcgggcggga
gagctggacctgctctacgtcgcgcccgaacgcgccagccagccgcatttccgcgaattg
ctgggccagtgtcgcattgcactgttcgcgatagacgaggcgcattgtgtgtccgaatgg
ggccacgatttccgcccggactatcgcctgctccgcccactgatggacctgtttccgggc
gtgccgcgccttgcgctgaccgcgacggcggatgcacatacgcggtctgacatcctgaac
cagctgggcattccggaagagggcatgatcgtcgccgggttcgaccggcccaacatccgg
tatacgatccgtccgcgtgaaggtctgacgcagcaattgcgtcggttgctggcggccaat
cccggtcccggcatcgtctatgccccgacccgtgccgcgaccgaacggctggccgaggcg
ctttctgacggtaggcgcgaggtgcgcgcctatcacgcaggtctgccgccggaggtgcgc
gcggccaaccagtccgccttcgttgccagcgaggacatggtaatttgcgccaccgtcgcc
tttggcatgggtatcgacaagcccgacgtgcgcttcgtcgcccacgcgggcctgccgaaa
tcgattgaggcctattaccaggaaaccggccgcgcgggcagagacggcgatccggcaacg
gcgcacctgttctggggcgcggacgatttcgcccgtgcgcggatgcgggtgcaggaggtg
gaggaggtgcgccagcagggcgaacgcacgcggctgtcggcgctgggcgcactggtcgag
actgccggctgtcgccgcgcgatcctgctgcgacatttcggcgaaaccccgcccgaaacc
tgcggcaactgcgacaattgcctcgaaccgccgaagtcggtcgatgcgacggtggtggcg
cagaagtatctctccgccgtggcgcgcacgcggcagatgtacggggcgggccatatcgag
agcgtgctgctgggccagcatagcgaccgcgccagccagcagggacacgatacgctgtcg
gtctttggcattgtcgaaggcgaggaagcggcgctgctgaaacctgtgcaacgtgcgctg
ctggtgcgcggggcattgttgccgaccgagcatggcgggctgatgctggggccggaggcg
cggacatatctgaagggtgagcagccgctagacctcgtcctgccgccaaagcgcgaacgg
gggcggggtcgtaagaccggaggacaggcgctcaaccccgtgggcgatccgttgttcgat
gcgcttcgcgaattgcgccgtgacatggcgaaggagaacggcgtgccgccctatgtcatc
ttccacgattcggtcctgcgcgacatggccgggtttcgcccgcaaagccgcgaggcgctg
gccgatctgccaggcatcgggggcaagaagctcgacgcctatggcgagcagttcctgacc
gtcattcgacagcattcctga
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