Caldicellulosiruptor naganoensis: OTJ99_000207
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Entry
OTJ99_000207 CDS
T08720
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cnag
Caldicellulosiruptor naganoensis
Pathway
cnag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OTJ99_000207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnag03400
]
OTJ99_000207
Enzymes [BR:
cnag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OTJ99_000207
DNA repair and recombination proteins [BR:
cnag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OTJ99_000207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
AAA_11
Viral_helicase1
SLFN-g3_helicase
UvrD-helicase
HHH_5
Helicase_RecD
PIF1
AAA_22
nSTAND3
DEAD
AAA_24
NPHP3_N
AAA_12
UvrD_C
SRP54
HerA_C
PhoH
AAA_15
AAA
T2SSE
ATPase_2
MeaB
AAA_29
HHH_2
Thymidylate_kin
RsgA_GTPase
NTPase_1
ABC_ATPase
ABC_tran
AAA_28
Mg_chelatase
TrwB_AAD_bind
MIMI_R596-like_C
AAA_16
DUF2666
Motif
Other DBs
NCBI-ProteinID:
WAM31757
LinkDB
All DBs
Position
214066..216291
Genome browser
AA seq
741 aa
AA seq
DB search
MLQDIKGMVSDIIYKNLENNYTVFEILCDDEVFTAVGVVPDIAIGEKVKVYGEFYVHPVY
GQQLKVAYLEKLLPETKDEIYLYLSSGVIKGIGQKTAKRIVDTFGDDTMRVLQEEPEKLL
SIRGMTPEKVERIKNMFSFQKFLKDIMTIFSQYGLSQNHAMRLFKLYGFSALGLLYDNPY
FLLDVFPELDFKKVDRLALDMEVKIDDARRISAKIINLLNIGSNNEGHTCLPKEKLILLV
SKALEIDVEKVEETLESLVKARRVVIDTIDGIEMVFLFGFYECERFIADKIFSMLRQHED
ISNIDEKVAEFEKKNNIVFSQNQKKAIRMALTEGVSIITGGPGTGKTTIIKCIIDIFEQE
GKKVFLCAPTGRAAKRMQAACQKEAKTIHRLLEMTVTDSQVFFQKGPNNPLKCDVIIVDE
MSMVDSYIMYYLLSATKDTTRLVLVGDKDQLPSVGAGNILKDLIRSDVVPYVRLTEVYRQ
SEDSFIVLNAHRINNGEFPHLQKNSDFYFIQKNSQEEILKTIVELVTRKLPSYLSADPLT
DIQVLCPSKKGIVGMYNINRVLQQYLNPKDGSKKEIVYKENTFRVGDKVMQIKNNYSLEF
TIIEGEEKGKVSTGIFNGDIGVIKDIDRAGGAMEIVFDDDKLVFYDFSLLDDLELSYAMT
VHKSQGSEFRCIVMPVVETYPILMTRNLLYTAVTRAKELVVLVGKKSALEYMIANQKEAM
RYSALYDFLKRKLKDTQLQAL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggatataaaaggaatggtaagcgatataatatacaagaacttagagaacaac
tacacagtgtttgagatactctgtgatgatgaggttttcacagcagtgggagttgtgcca
gacattgcgattggtgaaaaggtaaaggtgtacggagagttttatgtccatcctgtctat
ggtcagcagcttaaagttgcataccttgaaaagcttttgccagagacaaaggatgagatt
tacctctacctttcttcaggtgtcatcaaaggcattgggcagaagactgcaaagaggatt
gttgatacatttggcgatgatacaatgagagttttgcaggaagagccagaaaagcttctt
tcaatccgcgggatgacacctgagaaagttgaaaggataaagaatatgttttcattccag
aagtttttgaaagacatcatgacaatattctcccagtacggactttcacagaaccatgca
atgaggctttttaaactctatggtttttcagctttggggctactttatgacaacccctat
tttttgcttgacgtatttccagaacttgactttaagaaggtagacaggcttgcacttgat
atggaagttaagatagatgatgcaagaagaatctctgcaaagattataaatcttttgaac
ataggcagcaataatgaaggacacacatgccttccgaaagaaaaactcattttgcttgtt
tcaaaggcattggaaatagatgttgaaaaagtagaagaaacacttgagagccttgtaaaa
gccagaagagttgttattgacacgatagatggtattgagatggtttttctgtttggattt
tacgaatgtgaaaggtttattgctgacaagattttttctatgctaagacaacacgaggac
atttctaacatagacgaaaaagttgctgaatttgagaagaaaaacaacatagtattttca
caaaatcagaaaaaagctattaggatggctttaactgagggtgtgagcataattacagga
ggacctggcacaggaaagactacaattataaaatgtataattgacatatttgaacaggaa
ggcaagaaggtttttctttgcgcaccaactggaagggcagcaaagaggatgcaagcagcc
tgccagaaagaggcaaagactattcacagacttttggaaatgactgtaacagactctcaa
gtattttttcaaaaagggcccaataatcctttgaaatgtgatgtcattatagttgatgag
atgagcatggtagacagctacatcatgtactatcttctttctgcaacaaaagatacaaca
agacttgttttagttggcgataaagaccagcttccttctgttggtgcaggaaatatctta
aaagacctgataagaagcgatgttgttccatatgtaaggcttactgaagtgtacaggcaa
agtgaagacagctttatagttctaaatgcacacaggataaacaatggagagtttccgcac
cttcagaaaaacagcgatttttatttcattcaaaaaaattctcaagaggaaatactaaag
accattgttgagcttgtaacaagaaaactcccaagctacttgtcagccgacccgctgaca
gacattcaggttttgtgtccttctaaaaaaggaattgttggaatgtataatataaacagg
gtacttcagcagtatttaaatcccaaagatgggtccaaaaaggagattgtgtacaaagag
aacaccttcagagttggcgacaaggttatgcagattaaaaacaactactcgcttgagttt
acaattattgaaggtgaggagaaaggtaaggtctcaacagggatattcaacggcgatatt
ggggttattaaggacattgacagggcaggcggtgcaatggagattgtatttgacgatgac
aagcttgtattttacgacttttcgctcttggatgacttggaactttcttatgcaatgaca
gttcacaaatcccaagggtctgagtttaggtgcattgtaatgccagttgttgagacctac
ccgattttaatgacaagaaaccttctgtacacagcagttacgcgcgcaaaagagcttgtt
gtgctggtgggtaaaaaaagtgccttggagtacatgatagcaaaccaaaaagaggctatg
cgatattcagcactttacgactttttaaaaaggaagctaaaagatacgcaattgcaagct
ttatga
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