Caldicellulosiruptor naganoensis: OTJ99_000556
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Entry
OTJ99_000556 CDS
T08720
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
cnag
Caldicellulosiruptor naganoensis
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnag03032
]
OTJ99_000556
03036 Chromosome and associated proteins [BR:
cnag03036
]
OTJ99_000556
03400 DNA repair and recombination proteins [BR:
cnag03400
]
OTJ99_000556
DNA replication proteins [BR:
cnag03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
OTJ99_000556
Chromosome and associated proteins [BR:
cnag03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
OTJ99_000556
DNA repair and recombination proteins [BR:
cnag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
OTJ99_000556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
HU-DNA_bdg
DUF2267
NNH1
DUF4836
VWA_3
Lmo2446-like_N
Motif
Other DBs
NCBI-ProteinID:
WAM32058
LinkDB
All DBs
Position
603566..603841
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AA seq
91 aa
AA seq
DB search
MNKTDLISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG
RNPQTQEEIKIPATKVPVFKAGKMLKEAVAK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagacagatttaatttcagcaatggcagaaaagagcggacttaccaagaaggat
gcagaaaaggcactcaatgcgtttgtagatgctgttacagaggcactctctaagggggaa
aaggttcagcttgttggttttggttcatttgaggtaagagaaagagcagagagagttgga
agaaatccacaaacacaagaagaaattaagattccagcaacaaaagttcctgtattcaag
gcaggcaagatgttaaaagaggctgtggcaaaataa
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