Caldicellulosiruptor naganoensis: OTJ99_000663
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Entry
OTJ99_000663 CDS
T08720
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cnag
Caldicellulosiruptor naganoensis
Pathway
cnag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OTJ99_000663 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnag03019
]
OTJ99_000663 (rnr)
03016 Transfer RNA biogenesis [BR:
cnag03016
]
OTJ99_000663 (rnr)
Enzymes [BR:
cnag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OTJ99_000663 (rnr)
Messenger RNA biogenesis [BR:
cnag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OTJ99_000663 (rnr)
Transfer RNA biogenesis [BR:
cnag03016
]
Prokaryotic type
tRNA degradation factors
OTJ99_000663 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_TBPIP
Motif
Other DBs
NCBI-ProteinID:
WAM32155
UniProt:
A0ABY7BH50
LinkDB
All DBs
Position
694975..697107
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AA seq
710 aa
AA seq
DB search
MRKAKFEEKKQEVWSLIQEESYHPMTFSEILGILGWSGKDELLLKRILDELEQEGKIVRT
KRGRYGLAEEMNLFVGTLEVNPRGFGFLIPDNPNVPDIFISAENMNGAMHGDRVLVKALS
LPVEGKKVEGYVERILKRGITRVVGRYEDSRNFGFVIPDDQRITYDIYIPKSGKNKAKTG
QKVVVEITRYPEKRRNPEGRIVEILGYENAKGVDILSIIKKYELDEEFPKEVLKEVENIP
DVVLEEEIEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPN
THLDKEAFRRGTSVYLVDRVIPMLPFKLSNGICSLNPNVDRLTFSVLMEIDKNGNVIKHD
IFESVIRSKERMTYTNVTKILKEEDKDLLKRYEHIREDLELMKELALILREKRMKRGALD
FDFDETKVIIDKNGKPIDVRRYELTISNKIIEEFMLVCNETVANHFFWLNVPFLYRVHEE
PDPEKIYQFAEFIYNMGYVLKGISNKIYPKALQAILEQSRGTPEERVIHTLCLRSLKKAR
YCEENLGHFGLSTDYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAERLRRKMPEIAK
WTSQREQIAEEAERETVELKKVEFMTDKIGQVFEGIISNVTPFGFFVELENTIEGLVRVS
SLEDDYYVFNEKTYQLIGEKSKKVYKIGDKVKVKLIDANVALRQIEFTIV
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaaggcaaagtttgaagaaaagaaacaagaagtgtggagcttaatccaagaagaa
agctatcatcccatgactttttctgagattttaggtatcttgggctggagtggaaaagat
gagcttttgctcaaacgaatacttgatgaacttgagcaggaaggcaaaattgttaggaca
aagcgtggaagatacggtcttgccgaggagatgaacctttttgttggcacattagaagta
aatccccgtggatttggatttttgattcctgacaatcccaatgttcctgatatttttatc
tcagcagaaaatatgaacggagctatgcatggggatagagtgcttgtcaaggcactttct
ttgcctgttgaagggaaaaaggttgaagggtatgttgagaggattttaaaaagaggaatt
acaagagttgttggaagatatgaagacagcagaaactttggatttgtaattccagatgac
cagcgaataacctatgacatatatattccaaagagcgggaaaaacaaagcaaagacaggg
caaaaggttgttgttgagattacaaggtatcctgaaaagagaaggaaccctgaaggaaga
attgttgagattttgggatatgaaaatgcaaaaggagtagatatattatcaatcattaaa
aagtacgaattagatgaagaatttccaaaagaggtcttaaaagaggttgagaatatccct
gatgtggttttagaagaggaaattgaaggaagagttgatttaagagactggacaatcttt
acaattgacggtgaggatgcaaaggactttgacgatgcagtatctatcaaaaagcttcca
aacggcaactatctactgggcgttcacattgcagatgtcagccattatgtaaagccaaat
acacaccttgacaaagaggctttcaggcgaggaacaagcgtctatcttgttgacagagta
atcccaatgcttcctttcaagctgtcaaacggaatttgttctctcaacccaaatgttgat
agactcaccttttctgtgctaatggaaatagacaaaaacggcaatgtgataaagcatgat
atatttgaaagcgttataagaagcaaggagaggatgacatacacaaatgtaacaaagata
cttaaagaagaggacaaagaccttctcaaaagatatgaacacataagagaagatttggag
ctgatgaaagaacttgcactaattttgcgcgaaaagcgtatgaaacgtggggctttggac
tttgactttgacgagacaaaggtgatcattgataaaaacggcaaaccaattgatgtcaga
aggtatgagctcacaatctcaaacaagataatagaggagttcatgcttgtctgcaatgag
acagttgcaaatcacttcttttggctaaatgttccgtttttgtacagagttcatgaagaa
cctgatccagaaaagatataccagtttgcggagtttatatacaatatgggctatgttctg
aaaggaatttccaacaagatttaccccaaggcactgcaagcaattttagaacaaagcagg
ggcacaccagaagagagggtaattcacacgctttgtcttcgctcacttaaaaaagcaagg
tattgtgaagaaaatcttggacactttggtctttcgacagattactattgtcatttcaca
tcacccattagaagatatcctgaccttgtaattcacagaattatgaaagatgttctaaaa
ggtaagatgacagaaaagaaagcagaaagacttcgccgcaagatgcctgaaatagcaaaa
tggacatcgcagcgagaacagatagctgaagaggctgaaagagaaacagttgaactcaag
aaagtagagtttatgacagacaaaatcggtcaggtttttgaaggtattatttcaaacgtc
acgccttttggcttttttgtggagcttgagaacactattgaagggcttgtaagagtgagt
tccttagaagatgattattatgtatttaacgaaaagacatatcaactaattggagagaag
tcaaaaaaggtgtataagataggagacaaggtgaaggtaaaacttattgatgcaaatgta
gctttaaggcagatagagtttacaatcgtgtga
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