Caldicellulosiruptor naganoensis: OTJ99_001128
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Entry
OTJ99_001128 CDS
T08720
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
cnag
Caldicellulosiruptor naganoensis
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cnag03009
]
OTJ99_001128 (rimO)
Enzymes [BR:
cnag01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
OTJ99_001128 (rimO)
Ribosome biogenesis [BR:
cnag03009
]
Prokaryotic type
ribosomal protein modification factors
OTJ99_001128 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
RIM2a_ZnF
Motif
Other DBs
NCBI-ProteinID:
WAM32557
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Position
1165494..1166816
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AA seq
440 aa
AA seq
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MVKVGFVSLGCNKNLVDSEIMMGACKEAGFEITPNAEDADVIVINTCGFINDAKQESIDT
ILEMAEYKNKKCKFLIVTGCLTQRYKDEILKEMPEIDAILGVKEMLKLPEVIKKLYEGEG
KLQVFDNKATFVYTSSTPRIIATPKYYAYIKIAEGCNNRCSYCSIPLIRGDYVSRYMDDI
IKEAEKLAKGGYKEIVLTAQDTTKYGLDIYKRKMLPILLQRLSEIDNIKWIRFLYSYPED
IDDELLNVIKDLPKVVKYFDIPIQHINNRILKLMNRRTSSENIKELIKRIRSAFDEVVIR
TTVMVGFPTESEDEFEELYEFVKWAKFDRLGAFMYSQEEGTPAASLPQIDDETKVERYER
ILNLQRKISLEQNRKRIGKKYEVVIEGRDKNNFYIARSQFEAPEVDGKIIAFSKRKLLPG
EYVTVKILDAFEYDLVGEVI
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
ttggtgaaggttggatttgtttcacttgggtgcaacaaaaatcttgttgacagcgaaata
atgatgggtgcttgtaaagaggcaggttttgaaataacaccaaacgcagaggatgctgat
gtgattgttatcaatacttgcggatttataaatgatgcaaaacaagagtcgattgacact
atattggagatggccgagtacaaaaacaagaaatgcaaatttttgatagtaacaggatgc
ttgacgcagcgctataaagatgaaattttaaaagagatgccagaaatagatgcgatcctt
ggtgttaaagagatgctaaaactcccagaggtaatcaaaaaactctatgagggagagggt
aaactccaggtatttgacaacaaggctacatttgtctacacaagttccacaccacgcatt
attgcaaccccaaagtattatgcctacataaaaatagcagaaggttgtaataacagatgt
tcctattgttcaattccattgattagaggggattacgtaagtagatatatggatgatata
atcaaagaagcagagaaacttgctaaaggtggttataaagagattgtgcttactgctcaa
gatacaacaaaatatggattagatatatacaagagaaagatgttaccaatcttgcttcaa
aggttaagtgaaattgataacataaaatggattaggtttttatattcttatccagaagat
attgacgatgaactgttaaatgttataaaagaccttccaaaagtagttaaatactttgat
ataccaattcagcatattaacaacagaattttgaaactgatgaacagaagaacttcatca
gaaaatattaaagagctgattaaaaggataaggtcggcatttgatgaggttgttataaga
acaacagttatggttggattcccaacagagtcagaagatgagtttgaagagctttatgag
tttgtcaagtgggcaaagtttgatagacttggtgcgtttatgtactctcaggaagaggga
acaccagctgcttctttaccacaaatagatgatgagacaaaagtcgaaagatatgaaaga
attttaaatcttcagagaaagatctcacttgaacaaaatagaaaaagaatcggcaaaaag
tatgaggttgtaatagaaggcagagataagaataacttttacattgcaagaagccagttt
gaagctcctgaggttgacggcaaaattatagcattctctaagcgaaagcttttgccagga
gagtatgtgactgtaaaaatcttggatgcttttgagtatgatttagtaggagaggtaatt
tga
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