Caldicellulosiruptor naganoensis: OTJ99_001471
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Entry
OTJ99_001471 CDS
T08720
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cnag
Caldicellulosiruptor naganoensis
Pathway
cnag03030
DNA replication
cnag03430
Mismatch repair
cnag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OTJ99_001471
03430 Mismatch repair
OTJ99_001471
03440 Homologous recombination
OTJ99_001471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnag03032
]
OTJ99_001471
03400 DNA repair and recombination proteins [BR:
cnag03400
]
OTJ99_001471
Enzymes [BR:
cnag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OTJ99_001471
DNA replication proteins [BR:
cnag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OTJ99_001471
DNA repair and recombination proteins [BR:
cnag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OTJ99_001471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
tRNA_anti_2
At5g48480-like_N
Motif
Other DBs
NCBI-ProteinID:
WAM30698
LinkDB
All DBs
Position
complement(1485064..1488489)
Genome browser
AA seq
1141 aa
AA seq
DB search
MSFVHLHVHTEYSLLDGAVRIGSLFERVKQLNMQSIAITDHGAMYGVVEFYKAAKEHGIK
PIIGCEVYIAPRSRFDKEPNIDNDIHHLVLLAMDNDGYKNLSKIVSLGFIEGFYYKPRID
REILSKYSKGLIALTSCLAGEIPKLILRDQKEKLVDAISFYKDTFGSNFYLELQYHGIEE
QRFVNSELIRLSKKYQIPLVATNDVHYLRKEDREIHEILLCIQTGKTIHDSNKMEFPTNE
FYLKSPEEMEEIFGYVPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGKSDAFEYLKEL
ALSGFEKRYSKEDKAAYDRLLMELSVIRDMGFTEYFLIVHDFINFAKQNNIMVGPGRGSA
AGSIVAYCLGITNVDPIKYNLLFERFLNPERVSMPDIDIDFCYQRRQEVIDYVTNKYGKD
RVSQIITFGTMAARASIRDVGRALGIPYAQVDEIAKMIPFSPGMTIDKALEINYDLKKLY
DQNDTVRRIIDTAKSLEGMPRHTSVHAAGVVISNCPITELVPLAKTEDAIVTQFPMTNLE
ELGLLKMDFLGLRTLTVIQNTLELIKKHRNIEIDLDKIDYNDKNVYQFISEGNTNGVFQL
ESSGMKQFMKELKPENLEDVIAGISLFRPGPMDQIPVYIQNKNNKGKIEYLHPKLEPILN
VTYGCIVYQEQVMQIFRELAGYSLGRADLVRRAMAKKKADILMEERDRFIEGAVANGVDR
QVAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKRYFTIEFMTSLITSVMNSNEKVG
MYIEECRRFGISVLPPDINKSSYDFTIEGNSIRFGLRAIKSLGENVISHILKEREQNGEF
KDLYDFIMRVDTNTVNKRIIENLIKSGAFDFTKVNRNSLLASVEDILTIKQLQKKSANQV
TFFEISNSDIELFSYKNLPQPSPEELLQMEKDAIGIYITGHPLEKYADLISKYNVVNLAE
LSNMTEEDEYKYQQILVCGVLKEVKIKLTKNNQTMAFAKLEDLTDSLEVLFFPSVYEKYS
HLMKEDSILLIEAKATYREDEGVKIIAQKIDRLGEKEDSLSSPKKSNKAVAIKTDDDSIL
KSKKFTSFVKFFTGSSKIIVYYKQKRLVSKANMCIDINDVVIEQLKEWFGEENVWLEDLD
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgtacatcttcatgtgcatacagaatatagtttgcttgacggagctgttcgg
ataggaagcttatttgaaagagtaaaacagcttaatatgcaaagcattgcgataacagac
catggagctatgtatggggttgttgaattttacaaggcagcaaaagaacatggaataaag
ccaattataggatgtgaagtatatattgctcctcgttcacggtttgacaaagaaccaaat
attgacaatgatattcatcatttggtacttcttgcaatggacaatgacgggtacaaaaac
ctttcaaagattgtctcactgggatttattgagggattttattataagccaagaattgac
agggaaatcctttctaagtattcaaaaggtttaattgcgctgacaagctgtcttgctgga
gagatacctaaattaattctcagagaccaaaaggaaaaattagttgatgcgattagtttt
tacaaagatacttttgggagcaacttttatttagaacttcaatatcacggaattgaagag
caaagatttgtaaatagtgaactcataagactttctaaaaaataccagattcctcttgta
gctacaaatgatgtacattatctaagaaaagaagatagagaaattcacgaaatattgctt
tgtattcagacaggtaaaacaatacatgatagcaataaaatggagtttcctacaaatgag
ttttatctcaaatctcctgaagagatggaagaaatatttgggtatgttcctgaggcgctt
aagaatacgttggagattgctgaaaaatgtaacgttgaatttgaatttggaaagattaac
cttccaaaatttcaactaccagaaggaaaatctgatgcgtttgagtatctcaaagagtta
gcactgtctggttttgaaaaaagatattcaaaagaagacaaagcagcatatgacagactt
ttaatggaattaagtgtgataagagacatgggttttacagaatactttttgattgtccac
gattttataaactttgcaaaacagaacaatataatggtcgggcctggtagaggatctgcg
gcaggaagcatagttgcatattgtcttggaattacaaacgtcgatccaatcaagtataat
cttctttttgagagatttttgaaccctgaaagggtttctatgcctgatattgatattgat
ttttgctatcaacgaaggcaagaagtaattgattacgttactaacaagtacggtaaagat
agagtaagccaaataataacatttggtacaatggcagcaagagcctcaataagagatgtg
ggaagagcacttggtataccatatgcgcaagttgatgagattgcaaagatgatacctttt
tcacctggcatgacaattgataaggcgcttgagataaattatgaccttaaaaaattgtat
gatcaaaacgacactgtcagaagaataattgacactgcaaaaagtctggagggaatgcca
cgccacacttcagttcacgcagcaggagttgttatttcaaactgtccgattaccgaactg
gttcctttagcaaaaacagaggatgctatagttactcaattcccaatgaccaatttagaa
gagcttggacttttgaagatggactttttaggattgaggactctcactgtcattcagaat
accttagaacttataaaaaaacatcgcaacattgaaattgaccttgacaaaattgactac
aatgacaagaatgtttaccagttcatttccgaaggaaatacaaatggagtgttccagctt
gaaagcagtggtatgaaacagttcatgaaagaattaaaaccagaaaatttagaggacgta
atagcaggaatatctcttttcagaccaggtcctatggaccagattccagtatatattcaa
aacaaaaacaataaagggaaaattgagtacttgcatccaaaacttgagccaattttaaat
gttacgtacggatgtatagtttatcaagagcaagttatgcagatttttagagaacttgca
ggctattcacttgggagagcggaccttgtcagacgcgcaatggcaaagaaaaaagcagac
attttgatggaagagagagatagatttattgaaggagctgttgccaacggtgttgatagg
caggtagcagaaaagatatttgcaataattgaggactttgcaagctatgcatttaacaag
tctcatgcagcagcttatgctattttggcgtatcagacagcttatttgaagagatacttt
accattgaatttatgacaagcttaattacaagtgtaatgaactcaaatgaaaaggttgga
atgtatattgaggagtgtagaagatttggaatttcggtcctgccacctgatataaacaaa
agtagctatgactttacaatcgaggggaatagtattagatttggtttgagagcaataaag
agcttaggcgaaaatgtcatttctcatattttaaaagaacgcgaacagaatggagagttc
aaggacttatatgattttataatgagagtagatactaatacggtgaacaagagaattatt
gagaacttaataaaaagtggagcttttgattttacgaaggtaaacagaaattcactctta
gcttctgtggaagatattcttacaattaagcaattgcaaaagaaaagtgcaaatcaagtg
acgttttttgaaatatctaacagtgacatagagcttttttcatacaaaaaccttcctcaa
ccgagtcctgaggaacttttgcaaatggaaaaagatgcaataggaatctatataactggt
catccattggaaaagtacgcagatttgatttcaaaatacaatgttgtgaatttagctgaa
ctttctaatatgacagaagaagatgagtacaaataccagcaaatacttgtatgtggagtc
ttgaaagaggtaaaaataaaacttaccaagaacaaccaaacaatggcatttgcaaaattg
gaagatttgaccgattctttagaagttttgttttttccaagcgtttacgaaaagtattca
catttaatgaaagaagattcaattttattgattgaagcaaaagccacatacagagaagat
gaaggtgtgaaaattattgcacaaaaaatagatagacttggtgagaaagaagatagttta
tcttctccaaaaaaatctaataaagcagttgcaataaagacagacgacgactctattttg
aagtccaaaaagtttacctcttttgttaaattttttacaggtagttctaaaattattgtg
tattacaagcaaaaaaggcttgtttcaaaagcaaatatgtgcatagatataaatgacgtt
gtgattgagcaactaaaagagtggttcggtgaggaaaatgtgtggcttgaagatttagat
tcttga
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