Caldicellulosiruptor naganoensis: OTJ99_002168
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Entry
OTJ99_002168 CDS
T08720
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cnag
Caldicellulosiruptor naganoensis
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cnag03009
]
OTJ99_002168 (rlmD)
Enzymes [BR:
cnag01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OTJ99_002168 (rlmD)
Ribosome biogenesis [BR:
cnag03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OTJ99_002168 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
TRM5-TYW2_MTfase
MTS
PCMT
Motif
Other DBs
NCBI-ProteinID:
WAM31320
LinkDB
All DBs
Position
complement(2170274..2171629)
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AA seq
451 aa
AA seq
DB search
MVKVGDEFVVKIDALNHQAQGIARIDGYVVFVDHALLGEVLKVKIVEAKKEYGRAEIVEI
IEKSPYRKEPECPVYYECGGCHLMHTSYEHQLEIKRMLVKDAFKRIGKLSPKINPVFGME
NPFRYRNKVQFPVGKDRSGVKIGFYKKMTHEIVPTEFCLIQHRDTDRVIKVMKEIIKKYK
IEIYNEKLHTGILRHIMIRRSFAFDQMMIVLICTKMPDKIEEVKEELVTSFSNLKSLYVN
VNNKKTNVILGEKDILIWGSPTISDKIGKLLFEISPKSFFQVNSAQTEVLYSQVVKYLMN
IEAEVVFDIYSGIGTISMFVAPFCKKVYSIEIVRDAVEDAKRSSKNNGISNVEFICGCAE
IEIPKLLKSGIIPQAVILDPPRSGCEKELLESLIEHKISNIIYVSCNPSTLARDSSILCS
NGYEILEVQPVDMFPQTFHVECVVLFKKGYS
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaggttggggatgagtttgttgttaagatagacgctctgaatcaccaagctcag
ggtatagcaagaattgatggatatgttgtatttgtcgaccatgcacttttaggtgaggtt
ttgaaagtaaagatagtcgaagcaaagaaagaatacggaagggctgagattgttgagata
attgagaaaagtccttaccgcaaagagccagaatgtccggtttattatgaatgtggcgga
tgtcatttgatgcatacaagctatgaacatcagcttgagataaaaagaatgcttgttaag
gatgcattcaaaagaatagggaagctgagtcctaaaataaaccctgtttttggtatggaa
aatccttttaggtaccgcaacaaggtgcagtttcctgttggaaaggatagaagtggtgta
aagataggtttttataaaaagatgacacatgagattgttccaacagagttttgtcttatt
cagcacagagacactgatagagtaataaaagtgatgaaggaaataataaaaaagtacaaa
attgagatttacaatgaaaaacttcacacaggaatattgagacatataatgataagaagg
tcgtttgcatttgaccagatgatgattgtactcatttgcacaaaaatgccagataagatt
gaggaggtaaaagaagaattagtaacaagcttttcaaatttaaagtcgttgtatgtaaat
gtcaacaacaaaaaaacaaatgtaattttaggagaaaaagatatactgatttggggcagt
cctactatttccgacaagattggcaagctattgtttgaaatatcaccaaagtcatttttt
caggtaaattctgcgcaaacagaggtgctctacagtcaggtggtaaaatatctgatgaat
attgaagcagaagttgtatttgacatatactctggcataggcaccatttcaatgtttgtt
gcaccgttttgcaaaaaggtctatagcatagagatagttagagatgcagtggaagatgct
aaaagaagcagcaagaataatggcatttcgaatgttgaatttatatgtggctgtgcagaa
attgagattccaaagctattgaaaagcggaattataccccaggcagtgattcttgacccg
ccgcgaagtggatgtgaaaaagagctcttagaaagcttgatagagcacaagatttcaaac
ataatttatgtatcctgcaatccttcaacacttgcaagagatagcagtattctttgttca
aatggctatgaaattttagaagttcagcctgtggatatgtttccacagacatttcatgta
gagtgcgtggttttgtttaaaaagggctatagttaa
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